💥 I built DYNAMITE. 7 gene-calling engines. Phages, viruses, bacteria, archaea, eukaryotes. One command. Pure Rust. No Python. No dependencies circus. Crates crates.io/crates/dynam... GitHub github.com/raw-lab/dynamite 🧬 Genome in. Genes out. #Bioinformatics #Rust #Genomics

🌊🦠 Viruses are everywhere. Counting them shouldn’t be the bottleneck. Our new 96-well, hands-free flow cytometry workflow counts 60 aquatic samples in 2.25 hours—faster, cleaner, and more reproducible. In AEM Today journals.asm.org/doi/10.1128/... #phagesky #microbesky #phage #flow

High-throughput viral enumeration of aquatic ecosystems via flow cytometry | Applied and Environmental Microbiology

Viruses represent the most numerically abundant biological entity on planet Earth. Enumeration of viruses within aquatic ecosystems (e.g., lakes and oceans) is essential to viral ecology and our under...

journals.asm.org

Python got bioinformatics started. Rust will scale it. 🦀 Today we released rustyomestats, our first Rust crate for genome assembly statistics. Fast. Memory safe. Built for massive genomic datasets. Crates: lnkd.in/dP88c83F GitHub: lnkd.in/dDw2KNuX Rust is the way. #RustLang #Bioinformatics

Most high-performance bioinformatics software written 10 years from now will be in Rust. 🦀 Today we released rustyomestats — our first Rust crate ⚡ Genome size 🧬 GC content 📊 N50/L50/U50 🔬 Codon density 🚀 FASTA parsing GitHub: lnkd.in/dDw2KNuX Rust is the way. #RustLang #Bioinformatics

Most high-performance bioinformatics software written 10 years from now will be in Rust. 🦀 Today we released rustyomestats — our first Rust crate ⚡ Genome size 🧬 GC content 📊 N50/L50/U50 🔬 Codon density 🚀 FASTA parsing GitHub: lnkd.in/dDw2KNuX Rust is the way. #RustLang #Bioinformatics

Python got bioinformatics started. Rust will scale it. 🦀 Today we released rustyomestats, our first Rust crate for genome assembly statistics. Fast. Memory safe. Built for massive genomic datasets. Crates: lnkd.in/dP88c83F GitHub: lnkd.in/dDw2KNuX Rust is the way. #RustLang #Bioinformatics

Its official as of today - I am now an Associate Professor with Tenure at the University of North Carolina at Charlotte Dept of Bioinformatics & Genomics. A promise to my father - 20 years ago this Jan is finally complete. Never give up on your dreams - believe. #tenure

Bat Immunological Training Education (BITE) outreach at Discovery Place yesterday. We had 171 visitors at our booths today. We will continue to educate the public about diseases and immune responses. At Discovery Place every 3rd Saturday of the month. #microsky #bats #Stem Great job team!

Most RNA-seq pipelines are doing this wrong. They run differential expression… and stop there. You’re leaving biological signal on the table. I built pygage to fix that 👇 pip install pygage #Bioinformatics #rnaseq #computation #computationalbiology

#Bioinformatics #computationalbiology #datascience

raw9371@raw937.bsky.social · 4mo ago

🔬 Pathview-plus = powerful pathway visualization for bioinformatics 🚀 Thousands of pathway maps (KEGG + SBGNview) and super easy to use. Install in seconds: pip install pathview-plus GitHub: github.com/raw-lab/path... PyPI: pypi.org/project/path... #Bioinformatics #DataScience #Omics

🔬 Pathview-plus = powerful pathway visualization for bioinformatics 🚀 Thousands of pathway maps (KEGG + SBGNview) and super easy to use. Install in seconds: pip install pathview-plus GitHub: github.com/raw-lab/path... PyPI: pypi.org/project/path... #Bioinformatics #DataScience #Omics

The first automated computer vision–based software enabling the detection, enumeration, and sizing of virus-like particles from epifluorescence microscopy (EFM) images of environmental samples. Published online in BMC methods today. #giantvirus #phagesky Paper link.springer.com/article/10.1...

Resolving and quantifying viral-like particles via blind deconvolution - BMC Methods

BMC Methods - Viruses represent the most numerous’biological entities’on Earth; but the direct quantification of viruses within ecosystems is a significant challenge. The classical...

link.springer.com

@bhuwanabbot.bsky.social @morgancarterphd.bsky.social @raw937.bsky.social @andrabuchan.bsky.social et al. present a pangenome analysis of the endofungal genus Mycetohabitans, showing bacteria-fungus coevolution. 🔗 doi.org/10.1093/gbe/evaf231 #genome #evolution #pangenome #MicrobeSky

Comparative Genomics Reveals Multipartite Genomes Undergoing Loss in the Fungal Endosymbiotic Genus Mycetohabitans

Abstract. Endosymbiotic bacteria extensively impact phenotypes of their eukaryotic hosts, while experiencing dramatic changes to their own genome as they b

doi.org

Bat Immunological Training Education (BITE) outreach at Discovery Place yesterday. We had 324 visitors at our booths today. We will continue to educate the public about diseases and immune responses. At Discovery Place every 3rd Saturday of the month. #microsky #bats Great job team!

Awesome work. With some phageyness at the end. #phage #phagesky #microsky #evolution

Morgan Carter@morgancarterphd.bsky.social · 9mo ago

We are excited to present the accepted paper on the Mycetohabitans pangenome now in @genomebiolevol.bsky.social! 🧬🦠 Thanks to @bhuwanabbot.bsky.social for leading and collaborators: @raw937.bsky.social @andrabuchan.bsky.social academic.oup.com/gbe/advance-...

Latest in our #Phage collection Through #experimentalevolution, researchers at @ucsandiego.bsky.social trained #phages to increase their ability to inhibit multidrug-resistant and extensively drug-resistant Klebsiella pneumoniae 🧫 @natcomms.nature.com www.nature.com/articles/s41...

Experimental phage evolution results in expanded host ranges against antibiotic resistant Klebsiella pneumoniae isolates - Nature Communications

Ghatbale et al. adapted a co-evolutionary technique to develop Klebsiella pneumoniae phages to be highly active longitudinally against K. pneumoniae clinical isolates, including drug resistant isolate...

nature.com

#microsky #phagesky #phage

Ákos T Kovács@evolvedbiofilm.bsky.social · 9mo ago

Experimental phage evolution results in expanded host ranges against antibiotic resistant Klebsiella pneumoniae isolates -in @natcomms.nature.com www.nature.com/articles/s41...

Thanks for the repost

Ákos T Kovács@evolvedbiofilm.bsky.social · 9mo ago

Experimental phage evolution results in expanded host ranges against antibiotic resistant Klebsiella pneumoniae isolates -in @natcomms.nature.com www.nature.com/articles/s41...

Congratulations to my student Josh Hensley and our amazing collaborators at UCSD David Pride lab! In press today, we developed a technique to evolve phages to broaden bacterial host range to tackle bacteria that evade antibiotics. #phagesky #phage #microsky #virussky www.nature.com/articles/s41...

Experimental phage evolution results in expanded host ranges against antibiotic resistant Klebsiella pneumoniae isolates - Nature Communications

Ghatbale et al. adapted a co-evolutionary technique to develop Klebsiella pneumoniae phages to be highly active longitudinally against K. pneumoniae clinical isolates, including drug resistant isolate...

nature.com

Bat Immunological Training Education (BITE) outreach at Discovery Place today. We had 193 visitors at our booths today. We will continue to educate the public about bats, rodents, infectious diseases, and immune responses. At Discovery Place every 3rd Saturday of the month. #BITE #teamraw #rawlab

Cool 😎 paper @vivekmutalik.bsky.social www.biorxiv.org/content/10.1...

Phylogeny-agnostic strain-level prediction of phage-host interactions from genomes

Bacteriophages offer promising alternatives to antibiotics for treating drug-resistant infections and engineering microbiomes, but applications are limited by inability to select phages infecting spec...

biorxiv.org

In a world where an ancient evil has been awaken. Tom Cruise in "Phage." Coming Summer 2026 Needed a laugh/joke today. #phage #microsky #giantvirus #phagesky

#phage #phagesky

raw9371@raw937.bsky.social · 10mo ago

Take a look y'all phys.org/news/2025-10... #phage #phagesky #bacteriophage

Take a look y'all phys.org/news/2025-10... #phage #phagesky #bacteriophage

Phage G genome: AI analysis maps out world's largest cultivated bacteria-killing virus

Through cutting-edge methods and advanced artificial intelligence analysis, UNC Charlotte researchers leading a multidisciplinary team across four universities have successfully resolved the entire ge...

phys.org

Happy World Phage Day! May the phage be with you always! #bacteriophage #phage

Are these articles AI generated about our paper on phage G? Not even a phage shape. It looks like a CoV or InfA. #phage #phagesky Here is the real article about it cci.charlotte.edu/2025/10/10/c... Bioengineer - AI? bioengineer.org/decoding-the... Scienmag - AI? scienmag.com/decoding-the...

Decoding the Genome of a Cultivated Megaphage

In an era where the microscopic realm constantly challenges our understanding of life’s boundaries, a groundbreaking study has thrust megaphages into the scientific spotlight. These colossal v

bioengineer.org

Andra Buchan and Stephanie Wiedman completing the multiome of the only cultivated megaphage on Earth. #phage #phagesky cci.charlotte.edu/2025/10/10/c...

Multiomic analysis of the only megaphage in culture. In press today. Unlocking the genomic repertoire of a cultivated megaphage | npj Viruses share.google/HgU1cjRnaHWv... #phage #bacteriophage

Bat Immunological Training Education (BITE) outreach at Discovery Place today. We had 217 visitors at our booths today. We will continue to educate the public about bats and immunology At Discovery Place every 3rd Saturday of the month. #BITE #teamraw #rawlab Great job team!

We’re happy to announce Dr. Lennard Stach!! 🥳🥳 Well done Lennard for a brilliant defense and thesis!! We will miss you! Finally, thank you @leeselab.bsky.social for sitting in the thesis committee! 🫶