Dimitry Tegunov

@dtegunov.bsky.social

Mostly #cryoEM-related tweets. Group leader at a biotech company in the Bay Area. Views are my own. https://github.com/warpem/warp

So many people waking up today wishing they had prompted Fable a bit longer last night 😱 The government's reaction is completely overblown, of course. But it is a bit better than Opus 4.8 on average – enough that I wouldn't go back voluntarily if cost wasn't a factor

MissAlignment is out!!! Our new software that improves reference-free tilt series alignment by mimicking human intuition. Check out Dimitry's beautiful thread for a quick summary! And the preprint for more details: www.biorxiv.org/content/10.6... The program: github.com/warpem/miss-...

biorxiv.org

Dimitry Tegunov@dtegunov.bsky.social · 3mo ago

We're super excited to share MissAlignment: a new ML-based approach to reference-free tilt series alignment, spearheaded by @martenchaillet.bsky.social. We think it's going to make your cryo-ET life a lot better. Preprint: www.biorxiv.org/content/10.6... Code: github.com/warpem/miss-... 🧶 Thread:

Now my mailing list reply bot is getting spam targeted specifically at agents: containing an API key for the advertised service, and instructions to try it out and to copy part of the message as a skill .md to Claude's config. I wonder how often Claws running without any human oversight bite on that

What is the current resolution record for in situ nucleosomes? The best unofficial result I remember seeing was around 7 Å, but I feel like I've heard a better figure mentioned somewhere already

Here is why friends don't let friends calculate FSC on denoised half-maps. I took EMD-17961, denoised the maps using Warp's Noise2Map, and calculated the FSC between various things. With noise gone from the half-maps, their consistency is no longer related to SSNR. Denoised map vs. model still works

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Lars-Anders Carlson@lacarlson.bsky.social · 8mo ago

The icecream manuscript calculated FSCs between "half-tomograms" and compared to other methods (Fig. 3). Does that also qualify as a good comparison in your view? Just curious.

I'm used to seeing driverless Waymos at this point, but seeing a Waymo with no driver *and* no passengers roll down a hill still gave me a moment of “OMG THE PARKING BRAKE FAILED” panic