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Jakob Schuster

@jakobschuster.bsky.social

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Rob Patro @robp.bsky.social · 11mo ago

Woot! The mim preprint is live now. www.biorxiv.org/content/10.1... Happy Thanksgiving! Cc @curiouscoding.nl

mim: A lightweight auxiliary index to enable fast, parallel, gzipped FASTQ parsing

The FASTQ file format is the lingua franca of primary data distribution and processing across most of bioinformatics. Over time, the compression, storage, transmission, and decompression of gzip compr...

biorxiv.org

bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 12mo ago

Powerful read processing with matchbox https://www.biorxiv.org/content/10.1101/2025.11.09.685711v1

Quentin Gouil @qgouil.bsky.social · 12mo ago

Excited to share matchbox. It’s super fast and versatile to search for patterns in reads, I’m curious to see all the uses it will find! Congrats to @jakobschuster.bsky.social , co-supervisors @michaelbclark.bsky.social @mritchieau.bsky.social and team! www.biorxiv.org/content/10.1...