Great to be in Cambridge this week together with @brenda-enzymes.bsky.social, @arb-silva.bsky.social, #LPSN, and our #DSMZ colleagues from the Science Policy & Internationalization department to hear and talk about biological data 🦠📊.

DSMZ Digital Diversity@dsmzd3.bsky.social · 3d ago

We were delighted to take part in the inaugural #GlobalBiodataCoalition Conference this week at the Møller Institute in Cambridge, UK! 🧬🖥️ We enjoyed inspiring talks and many fruitful discussions, and we look forward to working even more closely together in the future. #GBC26 #OpenData #DSMZ

#ELIXIR connects people, data and expertise across Europe. Meet the members and the GA4GH partner behind the network in the first video of our new series 👉 youtu.be/0ODpOy7xqMQ?... #ResearchInfrastructure

An introduction to ELIXIR - Europe’s life science data infrastructure

YouTube video by ELIXIR Europe

youtu.be

🧬 Submitting Data to GHGA: A Practical Guide Learn how to share human genomic data securely & GDPR-compliantly with GHGA and @denbi.bsky.social 🗓️ Oct 22, 2026 | 13:00 CEST 🗣️ Paul Menges (GHGA/DKFZ) 🎟️ Free Registration: www.ghga.de/events/detai...

🧬 Big updates coming to @bacdive.bsky.social! Join us for an online workshop introducing our brand-new API—enabling automated, advanced queries across all BacDive data fields & genome annotations. Plus: GenomeBrowser & Search demos! 🗓️ Nov 17, 15:00 CET 📍 Online 🔗 www.denbi.de/training-cou...

Service of the week: Infrastructure for training events not just Galaxy, but R, Python, & more. TIaaS is provided by usegalaxy.eu and offers stable, dedicated resources for bioinformatics and data science courses of all sizes. Free for academic life scientists. Provided by RBC 👉 usegalaxy.eu/tiaas

📣 Job Announcement | Charité – Universitätsmedizin Berlin As part of the ImmunoPreCept Cluster of Excellence, Charité is inviting applications for: 🔬 4 x W2 Fixed-Term Professorships (limited to 5 years) 🔗 Learn more & apply here: www.denbi.de/news1/2160-4... #Jobs #Academia #Professorship

📢 Next Training Clinic: How to Avoid AI Problems in Training Courses Struggling with learner reliance on AI or navigating AI tools in your teaching? Join us to gain practical strategies and share experiences! 💡 Open to all! 📅 8 Oct 13:00-14:00 🔗 www.denbi.de/training-cou... #TrainTheTrainer #AI

☁️ Want to showcase your cloud-powered research to the community? Submit an abstract for a talk or poster at the de.NBI Cloud User Symposium! 📅 Nov 5–6, 2026 📍 Frankfurt 🧵 Register here: www.denbi.de/de-nbi-event... #deNBI #Bioinformatics #CloudComputing

de.NBI at EGI2026 in Ghent this week – two contributions on Wednesday: a talk on de.NBI cloud infrastructure and a live SimpleVM demo. Come find us! Demo: indico.egi.eu/event/6931/c... Talk: indico.egi.eu/event/6931/c... #EGI2026 #deNBI #SimpleVM #Ghent

🧬 Hands-on Course: Deep Learning in Bioinformatics 📅 Nov 30 – Dec 2, 2026 📍 Gießen Learn data preprocessing, training neural networks with Keras & Kerashub, and applying LLMs to biological data! 🐍 Req: Python & Linux -> www.denbi.de/training-cou... #DeepLearning #Bioinformatics #Python #AI

Congratulations to Klaus Rajewsky on receiving Emory University’s 2026 Max Cooper Prize in Immunology! 🎉 The award recognizes more than six decades of contributions that helped shape modern immunology. Klaus continues his research at the #mdcBerlin today. More: 👉 www.mdc-berlin.de/news/news/kl...

From 31 Aug to 4 Sept 2026, ELIXIR was in Geneva🇨🇭, for #ECCB2026, organised by @sib.swiss (#ELIXIR_Switzerland). 🙌 ELIXIR contributed a track programme, a poster track, ELIXIR Node-led workshops and tutorials, and a booth. Read the news 👉 https://elixir-europe.org/news/elixir-eccb-2026

🧬 Master MS-based omics! Join our hands-on course on LC-MS/MS ID, quantitation, Proteomics, Metabolomics & RNA. 📅 Sep 26-27 | 9-17h 📍 Singapore 💻 Bring laptop & your own data to discuss with experts! Infos: www.denbi.de/training-cou... #MassSpectrometry #Bioinformatics #Omics

The ELIXIR-funded FAIRyMAGs project has released a set of 🙌 openly available workflows, training materials and example #datasets to support researchers working with metagenome-assembled genomes 👉 loom.ly/yh_aNFE @ifb-elixir-fr.bsky.social @ebi.embl.org @denbi.bsky.social @elixir-it.bsky.social

@denbi.bsky.social was this week in Louvain la Neuve for the PHENET General Assembly #Bioinformatics #PlantPhenomics

Our article about Galaxy as a workbench for bioimage data management & analysis, training & community practices, has been published in the Journal of Microscopy (Wiley). Congratulations to all authors and contributors. Special thanks to @beatrizserrano.bsky.social. CC @denbi.bsky.social #UseGalaxy

BF Francis Ouellette@bffo.bsky.social · last mo.

From @kostrykin.bsky.social and colleagues in the Journal of #Microscopy | Bioimage management and analysis in Galaxy: Tools, workflows, training, and community practices | #OpenScience #Bioinformatics #UseGalaxy CC/ @galaxyproject.bsky.social | 🧬🖥️🧪🔬🔓 ⬇️ onlinelibrary.wiley.com/doi/10.1111/...

Very happy to see our newest (non-)benchmark study up on @natmethods.nature.com: doi.org/10.1038/s415.... Its started with the SpaceHack 2.0 hackathon back in 2023, where we wanted to benchmark methods for spatial clustering/niche/domain detection. Turns out this is very hard to do well...

Beyond benchmarking: an expert-guided consensus approach to spatially aware clustering - Nature Methods

Benchmarking spatially aware clustering is challenging. SACCELERATOR is an open-source, extensible framework that formalizes expert-guided spatial clustering analysis.

doi.org

📢 We are excited to announce that the new SILVA 144 Release is now live! See more details here: www.arb-silva.de/news/item/si...

SILVA Release 144 is here

arb-silva.de

At the start of 2026, EMBL lost long-serving colleague and Interim Director General Peer Bork. Join us in commemorating Peer and his legacy at the #EMBLBorkMemorial. Submit your abstract by 10 November: s.embl.org/pbs27-01-bl

Today the @denbi.bsky.social Summer School "Bioinformatics for Proteomics" started in Bochum

The OpenProblems.bio team will be the driving force behind "SpaceHack 5.0: Multi-Modal Spatial Benchmarking and FAIR Data Standards". We'll be covering spatial omics, foundation models, data archive and lots more. Details: www.denbi.de/de-nbi-event... Registration: www.denbi.de/helpdesk?opt...

Many thanks to @denbi.bsky.social for providing excellent computational resources for this project

🧬 Advanced Constraint-Based Modeling with CNA & CNApy (Part 2) 🗓️ Date: 19-Nov-2026, 2:00–6:00 PM (UTC+1) | 📍 Online Master advanced metabolic network modeling: Phase planes, Minimal Cut Sets, enzyme constraints & COBRA-k. Includes live demos & hands-on exercises! 👉 www.denbi.de/training-cou...

🚨 REGISTRATION IS NOW OPEN for BioHackathon Germany 2026! 🚨 The wait is over—you can now officially secure your spot! Work on 13 cutting-edge projects in Spatial Omics, RNA models & FAIR data. ⚠️ On-site seats are limited! 👉 Register now: www.denbi.de/de-nbi-event... #Bioinformatics #OpenScience

📢 Call for Contributions: de.NBI & de.KCD Cloud User Symposium 2026 Join us Nov 5–6 in Frankfurt! Submit an abstract on your de.NBI Cloud workflows to share insights & shape cloud infrastructure. Places limited! 🔗 www.denbi.de/de-nbi-event... #CloudComputing #Bioinformatics #OpenScience

🧫 Constraint-based Modeling of Metabolic Networks (Module 1) Learn metabolic flux analysis & constraint-based modeling using CellNetAnalyzer & CNApy! 📅 Nov 5, 2026 | 14:00–18:00 CET 📍 Online | Hands-on exercises 🆓 No prerequisites! 🔗 Register: www.denbi.de/training-cou... #SystemsBiology

🚀 BioHackathon projects are LIVE! From spatial omics to RNA models, explore 13 exciting challenges led by global experts. 📍 Location: Göttingen (On-site seats are limited, online attendance possible) ⏰ Participant registration opens NEXT WEEK! Check out the full list: www.denbi.de/de-nbi-event...

It is with deep sadness that de.NBI bid farewell to Prof. Dr. Reinhard Schneider. A vital part of de.NBI since 2015 & former SAB Chair, his leadership and wisdom deeply shaped our network. We lost a pioneer & cherished friend. Our thoughts are with his family. 🕯️ www.denbi.de/news/2136-in...

Huge congrats to the SpaceHack team! 🎉 A project born at BioHackathon Germany is out today in Nature Methods! 🚀🧬 📄 www.nature.com/articles/s41... 💡 www.nature.com/articles/s41... Proving how BioHackathon Germany fuel high-impact #OpenScience! 🌐 #BioHackathonDE #deNBI

Beyond benchmarking: an expert-guided consensus approach to spatially aware clustering - Nature Methods

Benchmarking spatially aware clustering is challenging. SACCELERATOR is an open-source, extensible framework that formalizes expert-guided spatial clustering analysis.

nature.com

How does ELIXIR engage with #industry? New ELIXIR onboarding video featuring Nils-Christian Lübke on de.NBI / ELIXIR Germany's industry engagement – part of the PeoplePulse project coordinated by Lisanna Paladin and Isabela Paredes Cisneros. www.youtube.com/watch?v=7m-4... #Bioinformatics

ELIXIR faces – How does ELIXIR engage with industry?

YouTube video by ELIXIR Europe

youtube.com