Did you miss our last joint webinar with @ghga.bsky.social 🧬💻? "Beyond the Script: Building Reproducible and Scalable Workflows with @nextflow.io" with Dr. Kübra Narci (Nextflow Ambassador / @dkfz.bsky.social) is now live on YouTube! 📺 Watch the full talk here: www.youtube.com/watch?v=LHfX...

Beyond the Script: Building Reproducible and Scalable Workflows with Nextflow with Kübra Narci

YouTube video by GHGA - The German Human Genome-Phenome Archive

youtube.com

☝️ Announcing 2 new trainings: Sep 30, “Kickstart Your Data Publication: A Hands-On Guide to Life Science Repositories” with @denbi.bsky.social and Oct 5 to 9, contributing to the “Seasonal School on Data Management in Biodiversity and Environmental Science” by NFDI4Biodiversity. More: t1p.de/8gxhv

🚀 Join us for our upcoming CLI Basics for Life Scientists Workshop 📅 Sept 21–25, 2026 📍 Bonn Learn to set up & administer your own de.NBI SimpleVM, handle big data transfers, and automate workflows using bash scripts & piping—applied to real-world plant genomics data! www.denbi.de/training-cou...

Public Service Announcement: SILVA has joined the Bluesky community! 

📢🎉 SILVA is part of the the DSMZ Digital Diversity consortium, a Global Core Biodata Resource and an ELIXIR Core Data Resource. www.arb-silva.de Follow for the latest information and announcements 🦠🔬👩‍🔬

🚀 Looking back at the de.KCD Industry Forum 2026! Our 'Cloud Data Security' event was a resounding success! Key takeaways: - Networks: New synergies & concrete project ideas. - Insights: Embedding data security from hardware to AI level. Thank you to everyone! What was your highlight? 👇

⚠️ Deadline Alert! Do you have a project idea for the BioHackathon Germany 2026? 🧬 You have until next Wednesday, July 15, to submit your proposals. Let's hack together this December in Göttingen! Submit your proposal here: www.denbi.de/de-nbi-event... #BioHackathon2026 #Bioinformatics #OpenScience

🚀 Ready to level up your data analysis? Join @denbi.bsky.social and #GHGA for our next webinar: Building Reproducible & Scalable Workflows with #Nextflow! Learn how to build portable, parallelized pipelines. 📅 16 July 2026 @ 13:00 CEST 🔗 Register here: t1p.de/fxx8g #Bioinformatics #ELIXIR

🧬 PATCH: A toolbox for large-scale pangenomics, from phylogeny to openness prediction. Scales to thousands of genomes! 🛠️ Features: Local alignments, core genome detection, a standardized SOCKS interface, & web tools. 🎓 Free for academics. 👉 www.denbi.de/services-acc... #Bioinformatics #OpenScience

#bioinformatics #PlantSciJobs #PlantSciJob

Boas Pucker@bpucker.bsky.social · 2mo ago

We are looking for a Bachelor's or Master's student to develop a functional annotation tool for large plant gene families. If you are excited about this opportunity, please get in touch. Details are available here: www.izmb.uni-bonn.de/en/pbb/news#... #Python #Bioinformatics @puckerlab.bsky.social

only one week left! Save your spot today: t1p.de/4je1v

The German Human Genome-Phenome Archive@ghga.bsky.social · 2mo ago

Learn to access & share data securely! Join de.NBI & ELIXIR-DE and GHGA’s webinar on July 1, 13:00 CEST. Expert Simon Parker explains Data Access Requests (DAR), DACs, and legal frameworks for the GHGA Data Portal. Register for free: t1p.de/4je1v

Research data is growing fast. How can we efficiently organize and connect it? Don’t miss this NFDITalk on Aruna, a federated platform that links data, metadata, storage, and repositories - making research data FAIR from the start. This service is supported and co-developed by #NFDI4Microbiota!

German National Research Data Infrastructure (NFDI)@nfdi.de · last mo.

Before our #NFDITalks take a short summer break, the topic on 6 July will be "Aruna - A Federated Data Orchestration Platform for Life Sciences and beyond". 🗓 Monday - 6 July, 4 PM – Online ➡ Zoom Meeting (with discussion): www. nfdi.de/talks ➡ YouTube stream: www. youtube.com/live/scI0M7m4_54

🧠 de.NBI Strategy World Café – done! Our PIs came together in Frankfurt to shape the future of de.NBI. Thanks to all PIs, to Irena Maus for organizing, and to Berinfor for accompanying the process. The feedback is now with our writing team. Watch this space. 🔜 #deNBI #Bioinformatics #Strategy

Last day of #biodiversity #bioinformatics summer school with @denbi.bsky.social & @sib.swiss - great presentation from Topic 4 Comparative #Genomics group

🌿 Biodiversity Summer School 2026 is in full swing in – with participants from Europe, the USA, Canada, and Costa Rica exploring eDNA, pangenomes, comparative genomics, and more. Organized by @sib.swiss and @denbi.bsky.social #Biodiversity #Bioinformatics #deNBI #ELIXIR

The Galaxy Europe / de.NBI team wrapped up #GCC2026 in Clermont-Ferrand 🇫🇷 – with a poster on de.NBI infrastructure, a lightning talk by Sanjay on MetaProFi, and de.NBI as a conference sponsor. Great to welcome new PhD student Franziska to her first GCC! 🔗 galaxyproject.org/events/gcc2026/

Great summary of Topic 4 progress and plans after day one, #biodiversity #bioinformatics summer ☀️ school 🏫 with @sib.swiss & @denbi.bsky.social

Day 1 of the #biodiversity #bioinformatics summer school organised by @sib.swiss & @denbi.bsky.social in Siegen, Germany

On the way to Siegen for the @sib.swiss & @denbi.bsky.social #biodiversity #bioinformatics summer school!

Naming tools is an art, and when it goes right it feels epic... until everyone pronounces the name wrong! Our cell-segmentation free too SAINSC was supposed to be pronounced "science", but no one managed to get it right. So, naturally, we improved documentation on RTD: sainsc.readthedocs.io/latest/

Join our workshop on Research Data Management #RDM for non-human pathogens! Learn the data life cycle, master ENA metadata standards, and get hands-on with the Webin Submission System to make your data truly #FAIR. 📅 Nov 10-11 | 09:00-12:30 CET (Online) 👇 Register now! www.denbi.de/training-cou...

Our @denbi.bsky.social NGS trimmer/preprocessor Trimmomatic has some additional speed ups using parallel (de)compression and some more developments upcoming. academic.oup.com/bioinformati... #NGS #bioinformatics #genomics

Trimmomatic: a decade of feature-rich, high-performance NGS read preprocessing

AbstractMotivation. Trimmomatic is a widely adopted tool for preprocessing high-throughput sequencing data, particularly from Illumina platforms. Since its

academic.oup.com

💻 #ELIXIR_TeSS provides a one-stop shop for trainers and trainees to discover online training materials. 💡Access to up-to-date training is essential for advancing life sciences research & maintaining a strong innovation ecosystem. Explore ELIXIR TeSS: ​​https://loom.ly/LXDBtGc

Service of the week: Calibration curves for targeted MS — without the spreadsheet chaos. CalibraCurve automates calibration analysis for proteomics, metabolomics & lipidomics: quantification limits, linearity, publication-ready ggplot2 plots, Nextflow integration. 👉 github.com/mpc-bioinfor...

Learn to access & share data securely! Join de.NBI & ELIXIR-DE and GHGA’s webinar on July 1, 13:00 CEST. Expert Simon Parker explains Data Access Requests (DAR), DACs, and legal frameworks for the GHGA Data Portal. Register for free: t1p.de/4je1v

🧬 Ready to elevate your bioinformatics & cloud skills? Join the joint de.NBI & de.KCD Summer School 2026 in Gießen (Sept 28 – Oct 2)! 💻 Intensive 5-day in-person tutorials on Cloud, Meta- & Pangenomics, Genomics plus RDM. ⚠️ Limited seats – apply now (Deadline 31 July)! www.denbi.de/training-cou...

What an incredible week at #ELIXIR26! 🇩🇪✨ The ELIXIR Germany team had fantastic three days in Lyon! A huge thank you to @ifb-elixir-fr.bsky.social & @elixir-europe.org for the outstanding hospitality and providing such a wonderful venue. 🇫🇷🙏 See you in Hungary in 2027! 🇭🇺 #Bioinformatics #OpenScience

We are looking for a new group member (BSc/MSc student) to bring our full plasmid sequencing data analysis workflow (NanoPlasmiQC) to the next level: www.izmb.uni-bonn.de/en/pbb/news#... #Python #Genomics #LongReads #Biotech #SynBio #Bioinformatics @puckerlab.bsky.social

We are looking for a Bachelor's or Master's student to develop a functional annotation tool for large plant gene families. If you are excited about this opportunity, please get in touch. Details are available here: www.izmb.uni-bonn.de/en/pbb/news#... #Python #Bioinformatics @puckerlab.bsky.social

🇫🇷 🇪🇺 Last week we attended @elixir-europe.org All Hands Meeting in Lyon to present our resources and talk about all things data. Did you know that four of our databases, BacDive 🦠, BRENDA 🧪, LPSN 📑, and SILVA 🧬, are ✨ ELIXIR Core Data Resources ✨? 👉 elixir-europe.org/platforms/da...

📢 The BacDive summer release is online! What is new: 🔹 Updated information on strains available in the Jena Microbial Resource Collection (JMRC) 🦠 and a new JMRC Special Collection 🔹Recalculated BacteriaNet genome-based predictions 🧬 🖥 🔹Links to Enterobase 🧫 👉 bacdive.dsmz.de/news/41