❓How much data is in BacDive? 👉BacDive currently contains ✨more than 3 million✨ distinct data points, which describe 101,417 prokaryotic strains 🦠 of 22,480 different species 🧫.
BacDive
@bacdive.bsky.social
BacDive is the worldwide largest database for strain-level bacterial and archaeal information. Our mission is to mobilize, standardize, and integrate research data from diverse sources and make it freely accessible. bacdive.dsmz.de
📢 The BacDive summer release is online! What is new: 🔹 Updated information on strains available in the Jena Microbial Resource Collection (JMRC) 🦠 and a new JMRC Special Collection 🔹Recalculated BacteriaNet genome-based predictions 🧬 🖥 🔹Links to Enterobase 🧫 👉 bacdive.dsmz.de/news/41
Would you like to know how to best search BacDive for strains 🦠, browse through genomes 🧬, read API test results 🧪, or use the web services 🖥️? Check out the new BacDive documentation 📖✨ 🔗 hub.dsmz.de/wiki/bacdive...
📣BacDive API Update Version 2 for the BacDive API endpoints ⌨️ has been introduced due to changes in the structure of the Genome Sequences data. ‼️We recommend migrating as new data added in latest, and upcoming, releases is only available through the BacDive API v2! 👉 api.bacdive.dsmz.de
api.bacdive.dsmz.de
The 2025 #BacDive 🦠 release is now online. 🎉🥳 The database now contains information on more than 100,000 strains 🧫. For this update, new data provided by @leibniz-dsmz.bsky.social and information on type strains of newly described species from the #LPSN database were added.
Most microbial diversity is uncultured. metaTraits bridges the gap by combining culture-based trait data (@bacdive.bsky.social, @bvbrc.bsky.social, JGI/GOLD/IMG) with predictions for MAGs and genomes (SPIRE, proGenomes). All trait summaries come with provenance and links to their original data. 4/8
We're excited to release metaTraits.embl.de! 🦠 Interactively explore 140+ 𝗺𝗶𝗰𝗿𝗼𝗯𝗶𝗮𝗹 𝗽𝗵𝗲𝗻𝗼𝘁𝘆𝗽𝗶𝗰 𝘁𝗿𝗮𝗶𝘁𝘀, harmonized & integrated from culture-derived collections 🔬 & genome-based predictions 🧬 for >2M MAGs & genomes. Publication at NAR: doi.org/10.1093/nar/... @narjournal.bsky.social #microsky 🧵 1/8
📣 Open position: We are looking for a new #ScientificLead for the #SILVA database 🧬🖥️ You will be responsible for guiding the development of this important resource and for curating the SILVA taxonomy🌳and more! 👉 www.dsmz.de/dsmz/career/... Read and share ‼️ #sciencejobs 🦠🧪 #career #taxonomy
This year's #BacDive workshop will take place on 24th November 2025, 3 - 5 PM CET online! We are especially looking forward to the opportunity to answer your questions, and hear your feedback and ideas. 🦠🧬. Write to training@bacdive.de to receive the Zoom login details 🖥️.
📆Save the date. 👉 This year's #BacDive workshop will take place on 24th November 2025, 3 - 5 PM CET online! Join us for updates and the opportunity to ask questions and provide feedback 🦠🧬. Write to training@bacdive.de to receive the Zoom login details 🖥️.
Just about to push a big update to our R package TaxSEA where we've spent a lot of time collating data from the BacDive database so it's readily usable in a metagenomics analysis. See example below from the HMP IBD data. #metagenomics #bioinformatics #microbiome #microbiota
Isabel from the BacDive Team will be at the @leibniz-dsmz.bsky.social booth at #FEMS2025 🦠 to answer your questions on #DSMZDigitalDiversity 🖥️🧬 databases.
FEMS@femsmicro.org · last yr.Prepare to be inspired and discover the new FEMS MICRO Milan 2025 day-to-day programme: buff.ly/eyLAber Designed to go beyond traditional presentations, this year’s programme offers interactive opportunities to exchange ideas and spark collaborations. #FEMS2025
🤩 Now published: 📄 Julia Koblitz's paper on making genome-based phenotypic trait predictions based on high-quality BacDive data and integrating predicted data into the database 🧬🖥️🦠. 👉 www.nature.com/articles/s42...
Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets - Communications Biology
Machine learning models link bacterial genomic features to key phenotypic traits using curated data from BacDive, enabling high-confidence predictions and expanding phenotype annotations across thousa...
nature.com
A new look for BacDive 🖥️🦠! We are excited to introduce the new BacDive design✨ and now invite all users to try it out. Tell us what you think, we look forward to your feedback! You can find it at 👉 beta.bacdive.dsmz.de or by clicking the red “New Design” button on every BacDive page.
New genome-based predictions 🧬🖥️ generated using a deepG GenomeNet model were recently added to BacDive 🦠. 33,913 predictions for Gram stain, motility, oxygen tolerance and spore formation with high confidence could be fully integrated into the strain data. 👉 bacdive.dsmz.de/news 👉 deepg.de
We had a great @vaam-microbes.bsky.social #VAAM2025 🦠 in Bochum! We loved getting to talk to so many of you about our databases. 🤩💬 See you next year! ✨
Just two weeks until #VAAM2025 🦠🤩 Meet us at the @leibniz-dsmz.bsky.social booth 👋 or at the following posters and talks 👩🏫: Poster P-CM-103 (Monday): #BacDive Poster P-MDE-143 (Monday): #LPSN Poster P-OT-346 (Tuesday): #SILVA Presentation (Monday lunch symposium): #StrainInfo
Read the newest @leibnizbiodiv.bsky.social newsletter 📄🌱🦠🦋 featuring #BacDive and @dsmzd3.bsky.social!
Leibniz-Forschungsnetzwerk Biodiversität@leibnizbiodiv.bsky.social · last yr.📰❄️ Here it is, #LeibnizBiodiv’s winter newsletter: bit.ly/3QOEyy1! This edition explores how #digitisation is shaping biodiversity research through insights from our network members. 🌍📊 Featured this time: @dsmz.bsky.social & @zalf.bsky.social! 🌱🦠🚀
Sneak peek 👀🤫 There is a new BacDive layout in the making 🤩. Who is excited to try it out soon? 🖥️🦠
BacDive in 2025: the core database for prokaryotic strain data The new @bacdive.bsky.social 🦠 publication reports on recent updates in content and functionalities. 👉 academic.oup.com/nar/article/...
BacDive in 2025: the core database for prokaryotic strain data
Abstract. In 2025, the bacterial diversity database BacDive is the leading database for strain-level bacterial and archaeal information. It has been select
academic.oup.com
🎄The DSMZ Digital Diversity team wishes you a happy holiday season and a very good start to 2025! ✨
❗The 2024 BacDive release is now online❗ New strains from the @leibniz-dsmz.bsky.social catalogue, new data provided by DSMZ curators, and information on type strains of newly described species were added to the database. 🦠 BacDive now contains 2,709,516 data points on 99,392 strains!
Our colleagues described 28 new bacterial species 🦠and named them all after female microbiologists 👩🔬. Read more in the press release linked below 👇 and also check out @leibniz-dsmz.bsky.social's social media Christmas calendar introducing the honored scientists and the bacteria named after them.
Leibniz Institute DSMZ@leibniz-dsmz.bsky.social · 2y agoDSMZ researchers characterized and named 28 actinomycetes with inhibiting effects against other microbes. Honouring the impact of female scientists, they named the newly described bacteria exclusively after #womeninscience. 👉 tinyurl.com/3uhs8ypc #biodiversity #antibiotics #microbes 📷 DSMZ
Welcome to Bluesky @brenda-enzymes.bsky.social #DSMZDigitalDiversity 🧪🦠🖥️🧬
‼️ Are you free today 2-4 PM CET? It's not too late to join our online workshop 👨💻🧪🦠! Just send us an email at ✉️ training@bacdive.de to receive the Zoom login details! @nfdi4microbiota.bsky.social @leibniz-dsmz.bsky.social #FAIRdata #databases #biology #DSMZDigitalDiversity
DSMZ Digital Diversity@dsmzd3.bsky.social · 2y agoThis year's workshop will take place on 11th November 2024, 2 - 4 PM CET online! Join us for updates on the #DSMZDigitalDiversity infrastructure 🖥️, @bacdive.bsky.social 🦠, #BRENDA 🧪, @lpsn.bsky.social 🌱, #SILVA 🧬, and more. Write to training@bacdive.de to receive the Zoom login details.
New BacDive publication is out 📄 Read about all news and updates of BacDive 🦠, the leading database for prokaryotic strain data! 2.6 million data points on 97,334 strains, a new SPARQL ✨ endpoint, genome-based predictions 🖥️🧬 and more. #DSMZDigitalDiversity #science 🧪 #databases #FAIRdata
BacDive in 2025: the core database for prokaryotic strain data
Abstract. In 2025, the bacterial diversity database BacDive is the leading database for strain-level bacterial and archaeal information. It has been select
academic.oup.com
This year's workshop will take place on 11th November 2024, 2 - 4 PM CET online! Join us for updates on the #DSMZDigitalDiversity infrastructure 🖥️, @bacdive.bsky.social 🦠, #BRENDA 🧪, @lpsn.bsky.social 🌱, #SILVA 🧬, and more. Write to training@bacdive.de to receive the Zoom login details.