🌎 🧬 🖥️ logan-search.org the tool to query all SRA sequences (Dec 2023 snapshot) — just got major updates. Here's what's new. 🧵 1/12

I am so honoured to receive this prestigious distinction from #ISCB. 🥰 Thank you so much 🙏

ISCB News@iscb.bsky.social · 6mo ago

🌟 ISCB proudly congratulates the 2026 Class of Fellows! 🌟 This prestigious recognition celebrates a career of significant impact and dedication to the #computationalbiology community.  ➡️Read more about this year’s Fellows and their contributions here: https://tinyurl.com/mtuf6m5b

🌎👩‍🔬 For 15+ years biology has accumulated petabytes (million gigabytes) of🧬DNA sequencing data🧬 from the far reaches of our planet.🦠🍄🌵 Logan now democratizes efficient access to the world’s most comprehensive genetics dataset. Free and open. doi.org/10.1101/2024...

👏 Ca y est, #JOBIM2025 est officiellement fini ! Au nom de toute l'équipe, merci pour votre participation, et pour toutes ces discussions scientifiques intenses et stimulantes. Merci aussi pour votre enthousiasme, votre bienveillance et tous ces rires échangés pendant la conférence. 1/2 ⤵️

Congratulations to Rayan Chiki, (Institut Pasteur) head of the “Sequence Bioinformatics” unit, for securing the ERC Proof of Concept 2025 for his project ENZYMINER! 👏 ‪@rayan.chiki.bsky.social #Bioinformatics

#JOBIM2025 glad to have Jana Ebler as keynote speaker in our mini symposium on graphs for pangenomics

Honestly seamless organization, good food, well done Bordeaux 👏🏻👏🏻

We finished this edition with a delightful keynote by Jean Monlong who guided us through his journey about finding SVs in pangenomes #JOBIM2025 👏🏻

This is going to be a cool event, invited talk by Jana Ebler + discussion panel and latest research activities in graphs+pangenomics!

Bonsai Sequence Bioinformatics@bonsaiseqbioinfo.bsky.social · last yr.

Also check the pangenomics mini-symposium, TBA a flash talk by @imartayan.bsky.social 🧬

Oh hey, the Harpy paper is out. The software's been available, but it's nice to have something in writing! It also works with other linked read data and non-linked data (wgs, rad) 😁

@bioinfoadv.bsky.social on Bluesky

🧬 Explore the latest from Bioinformatics Advances: “Harpy: A pipeline for processing haplotagging linked-read data”   Read the full paper here: https://doi.org/10.1093/bioadv/vbaf133 Authors include: @pvdimens.bsky.social

bsky.app

It is with joy and exhaustion I'd like to announce the release of Harpy v2 🎆. What's different? Uh, almost everything. The changelog is so long that even I don't want to read it. BUT. IT WORKS WITH WGS DATA. AND MOST LINKED READ TECH. it just works 🙂 github.com/pdimens/harpy

GitHub - pdimens/harpy: Process linked-read data, from raw sequences to phased haplotypes, batteries included. Works with WGS too!

Process linked-read data, from raw sequences to phased haplotypes, batteries included. Works with WGS too! - pdimens/harpy

github.com

Maybe the simplest idea to decrease overestimations of a counting bloom filter. A trivial observation + 10 lines of code. I'm surprised it has not been described before. Please comment if this is not the case. Blog post here: pierrepeterlongo.github.io/2025/03/17/m... 🧪🧬🖥️

🚨 Keynotes at RECOMB-seq 2025! 🚨 🌟 Alicia Oshlack – computational transcriptomics @aliciao.bsky.social 🌟 Rayan Chikhi – sequencing data structures @rayanchikhi.bsky.social 🗓️ Dates: April 24–25, 2025 📍 Seoul, South Korea recomb-seq.github.io/speakers/

➡️ M Jean Monlong sera #keynote speaker à #JOBIM2025 ! Il travaille à l'Institut de Recherche en Santé Digestive de Toulouse. 💊 Si la génomique fonctionnelle et intégrative vous intéresse, ne manquez pas de l'écouter et de le rencontrer en Juillet à Bordeaux pour #JOBIM2025 !

➡️ M Eric Rivals sera #keynote speaker à #JOBIM2025 ! Eric mène sa recherche au Laboratoire d'Informatique, de Robotique et de Microélectronique de Montpellier. 🧬 Si le développement de méthodes et d'algorithmes pour les séquences vous intéresse, rendez-vous en Juillet à Bordeaux pour #JOBIM2025 !

bsky.app/profile/pier... Applications for this position are still open. If you're passionate about large-scale science, we'd love to hear from you. 🧬 & 🖥️

Pierre Peterlongo@pierrepeterlongo.bsky.social · 2y ago

🚨🚨🚨 We are hiring 🚨🚨🚨 After the creation of logan-search (see: bsky.app/profile/pier...) we propose a 2-years engineer position for continuing the development and optimizations. With @rayanchikhi.bsky.social and @tlemane.bsky.social Details + applications: recrutement.inria.fr/public/class...

🚨🚨🚨 We are hiring 🚨🚨🚨 After the creation of logan-search (see: bsky.app/profile/pier...) we propose a 2-years engineer position for continuing the development and optimizations. With @rayanchikhi.bsky.social and @tlemane.bsky.social Details + applications: recrutement.inria.fr/public/class...

Pierre Peterlongo@pierrepeterlongo.bsky.social · 2y ago

🧬🔍There are 50 petabases of freely-available DNA sequencing data. We introducing Logan Search which allows you to search for any DNA sequence in minutes, bringing Earth’s largest genomic resource to your fingertips. 🏔️ logan-search.org 🏔️ #Genomics #Bioinformatics #OpenScience