Horacio V. Guzman
@gocompmodeling.bsky.social
Physicist and engineer, into multiple scale models of proteins/RNA/membranes, polymers, scientific computing, more --> http://tinyurl.com/goCompModeling
PhD position in Heidelberg: generating amorphous molecular thin films with diffusion models rather than waiting for MD to equilibrate them — free energies from the same model. With U. Köthe. 3 years, funded. Physics degree required. tristanbereau.com/positions/ge...
Generative machine learning for molecular thin films – Tristan Bereau
tristanbereau.com
Come join the new Novo Nordisk Foundation Center for Protein Design as a group leader Cool science in a great scientific environment in wonderful and very family friendly Copenhagen There are two positions that can either be at TT assistant or associate prof level employment.ku.dk/tenure-track...
Tenure-track Assistant Professor or Associate Professor of De novo Protein Design
The Novo Nordisk Foundation Center for Protein Design at the University of Copenhagen seeks to appoint two new group leaders in de novo protein design from 1 February 2027 or as soon as possible thereafter. These positions will be at the Assistant or Associate Professor level and associated with the Department of Biology (Faculty of Science) or the Department of Drug Design and Pharmacology (Faculty of Health and Medical Sciences).
employment.ku.dk
🔊don't miss it!
Rocío Mercado Oropeza@rociomer.bsky.social · 2mo agoOn Thursday we look forward to hosting Sereina Riniker (ETH Zürich) for the last AI4Science seminar of the academic year. Don't miss it! At 15:00 CEST 🇸🇪 in EDIT Analysen at Chalmers, and online. See link below for details: www.chalmers.se/en/current/c... Co-organized with @smnlssn.bsky.social
Cool... such a multifunctional molecule also in its ds version!🧬
Elisa Fadda@elisafadda.bsky.social · 3mo ago"RNA-binding of the adaptor complex is provided by Egl that engages targets by assembling multiple, atypical RNA-binding domains around double-stranded RNA stem loops (..) the shape of those is critical for recognition" (edited) @cellbiol-mrclmb.bsky.social *Wow* 🧪😎 share.google/b2QWuHfDo707...
Join us for PSA 2026! We are excited to announce the Peptide Self-Assembly Conference — From Dynamic Structures to Functional Materials — hosted by MPIP & JGU Mainz. 📍 Mainz, Germany | Aug 10–12, 2026 📅 Abstract deadline: June 10 🔗 Register here: www.psacon2026.com #PSA2026 @mpip-mainz.mpg.de
What's the role of glycans during adsorption on polarizable surfaces? Our work shows "dual capacity" acting either as a glue that enhances glycoprotein adsorption strength through dynamic-tethering patterns or as a blocking element that prevents protein-surface interactions #compchem @pubs.acs.org
Our latest paper in which we use multiple force fields to recover various conformations of the ribose transporter from E. coli. The work of DPhil student Nikolai Juraschko and postdoc Florencia Klein Rocha pubs.acs.org/doi/full/10....
Characterizing the Conformational Dynamics of the Ribose Transporter B Protein in Escherichia coli: Enhanced Sampling via Multiple Force Fields
We present a molecular dynamics simulation study of the E. coli ribose transporter protein B (RbsB), a conformationally labile protein found in the periplasm of the bacterium. The ribose transporter e...
pubs.acs.org
#PhDPosition open — #RibosomeBiology & #Translation QC 📍 JGU Mainz, Germany 🗓️ Apply by 10 Mar 2026 (or until filled) 🔗 Full details + project options: 👉 ak-winz.pharmazie.uni-mainz.de/jobs/
Jobs/internships/theses | Winz Lab - AK Winz
ak-winz.pharmazie.uni-mainz.de
My little outlook on how our lungs 🫁 are like the sea 🌊 is finally out in Central Science. Thanks to the support from incredible mentors @rommieamaro.bsky.social and @kprather.bsky.social !!
Carl Zimmer@carlzimmer.com · 8mo agoA new review explores one of the themes of my book Air-Borne: our lungs are like the ocean. Both send life into the atmosphere. pubs.acs.org/doi/full/10....
Not yet there for extracting a 3D model from a "picture image" and applying it to our #Proteins, #chompchmesky , #compchem; @Meta the protein was flatenned in the depth direction, otherwise would be great to track some Multiscale model AI mappings, and much more 🧬 🧶🪱
Thanks to the organizers for giving me the opportunity to present my lab' top-notch RNA models at multiple scales, including polymer physics(⚡ electrostatic and 🍦 mechanical properties) inputs and features of structural predictions with AI 🧵! #RNAtime #RNApuzzles #RNAmultiscaleSims #rnaProtInteract
Ina Huppertz@inahuppertz.bsky.social · 9mo agoLast Friday, we had an inspiring 10th Rhineland RNA Club meeting with top class speakers. It's great to see how the community is growing and the range of topics we're covering. Special thanks to Didier Stainier @stainierlab.bsky.social Simon Bekker-Jensen @bekkerjensenlab.bsky.social, Ranen Aviner!
Are you a postdoc stuck in the US?! Is your research stalled or are you in any way affected by the whims of that unfettered madman? Interested in MD simulations of large biomolecules?! Consider joining me at the University of Freiburg! uni-freiburg.de/frias/call-f...
Call for Applications: Early Career Rescue Fellowship – Freiburg Institute for Advanced Studies
uni-freiburg.de
BA.3.2 in Rheinland Pfalz 🇩🇪... most likely Hessen too... #compchemsky, #compchem, #goViralAgain #physVirology #compVirology
Raj Rajnarayanan@rajlabn.bsky.social · 9mo agoTracking SARSCoV2 Lineage BA.3.2* over time Total BA.3.2* - Globally: 63 Countries reporting BA.3.2*: #Australia, #SouthAfrica, #Netherlands, #USA (traveler seq), #Germany, #Mozambique, #Slovenia, #UK, #Denmark Tracker: public.tableau.com/app/profile/...
**Job Alert** Exciting postdoc position available: theoretical and experimental cryo-EM studies of flexible biomolecules. Competitive salary, collaborative environment at NYSBC and Flatiron Institute. Please share!! and contact: pcossio@flatironinstitute.org
📣 Check out our 𝔾𝕝𝕪𝕔𝕠-𝕒𝕕𝕤𝕠𝕣𝕡𝕥𝕚𝕠𝕟 on 𝔽𝕠𝕞𝕚𝕥𝕖𝕤 Preprint! doi.org/10.1101/2025... We highlight glycans’ dual capacity, to act either as a glue that dominates the whole glycoprotein adsorption strength via tethering, or as a blocking element preventing adsorption 1/2 #glycanResearch #glycanAsGlues 🩹🧵🦠
After 4 days of listening to top-notch experts in the field of glycoprotein/membrane interactions. I want to say big thanks to @rommieamaro.bsky.social @biophysmatt.bsky.social @rocovino.bsky.social and AtilioV & @giorgiocolombo.bsky.social for hosting me as a speaker and also poster presenter* 2!
awesome, and very helpful to the computational biophysist!🧶🪡
Nature Nanotechnology@natnano.nature.com · 12mo agoResearch Briefing: "Visualizing the nanostructure of the cell’s sugar coat." Here, the author's views, expert opinion, and insights behind the recently published paper "Ångström-resolution imaging of cell-surface glycans" are presented. #Glycotime www.nature.com/articles/s41...
Participate in Capri, BTW are glycan-protein complexes also tackled?
Alexandre Bonvin@amjjbonvin.bsky.social · last yr.A small reminder to all structural biologists around working on biomolecular complexes: please consider sharing your complexes as targets for CAPRI - AI has not solved all structure prediction problems and there are still challenges! See www.capri-docking.org/contribute/
Are you studying biophysical phenomena @interfaces ? Then check-out our newest toolbox doi.org/10.1016/j.bp..., featuring membranes and biopolymers (basic+advanced) analyses in 2D! 🫓 🏄 🦠🧬🧶 🪢Awesome Collab with @vmonje.bsky.social 's group! Video intro HERE!
Viviana Monje@vmonje.bsky.social · last yr.Our pre-print is officially published! Looking fwd to hearing your feedback on 2Danalysis, a Python toolbox for the analysis of biomolecular interactions at the membrane interface in 2D. Exciting collaboration with @gocompmodeling.bsky.social 10.1016/j.bpj.2025.05.026ith
Indeed exciting and intense conf. with an awesome speaker line-up. And many online questions 🪢🧶🧬🧵🙋#multiscaleRNA #compchem
Alessandra Magistrato@magistratolab.bsky.social · last yr.Almost at the end of the exciting @cecamevents.bsky.social conference 'RNA Modelling across scales' at SISSA, Trieste, Italy! 🎉 Fantastic speakers and great science. Organized with @bussigio.bsky.social @marcodevivo.bsky.social #RNA
This is a great opportiunity to contribute the Quitel2025, with an awesome speakers line-up @ young researchers from South America!!! #goMolecularModelingSA #compchemsky
CECAM@cecamevents.bsky.social · last yr.CECAM is proud to cover the registration fee for 10 early-career researchers from South America to attend the #QUITEL2025 conference in Cartagena, Colombia, on July 14-18, 2025. ➡️ cobo.uniandes.edu.co/index.php/qu...
Check out also the 𝟸𝙳𝚊𝚗𝚊𝚕𝚢𝚜𝚒𝚜 𝚝𝚞𝚝𝚘𝚛𝚒𝚊𝚕𝚜 as 𝐽𝑢𝑝𝑦𝑡𝑒𝑟 𝑁𝑏𝑠, we compiled for detailed guidance! in @github.com #compchem #compchemsky github.com/pyF4all/2Dan... Kudos to: @icmabcsic.bsky.social @ifimacuam.bsky.social @ageinves.bsky.social @cesga-hpc.bsky.social and my collab @vmonje.bsky.social
GitHub - pyF4all/2DanalysisTutorials: Collection of tutorials and examples of the novel MDanalysis library 2Danalysis, for biophysical systems
Collection of tutorials and examples of the novel MDanalysis library 2Danalysis, for biophysical systems - pyF4all/2DanalysisTutorials
github.com
Viviana Monje@vmonje.bsky.social · last yr.2Danalysis: check out out latest toolbox to project analysis of all-atom MD simulations of lipid membranes and biopolymers onto a plane to characterize the effect of molecular interactions & track patterns. Exciting collaboration with @gocompmodeling.bsky.social www.biorxiv.org/content/10.1...
Glad to share and support this just-in-time initiative for storing, managing, sharing and reusing MD-derived data. FAIR principles will also facilitate reproducibility, promote knowledge sharing, among many others powered by AI- methods #compchem #md4all #compchemsky @icmabcsic.bsky.social
Nature Methods@natmethods.nature.com · last yr.A Comment from leaders in the field of biomolecular simulations brings attention to a need to establish FAIR principles for trajectory storage and sharing to favor reuse under an open science paradigm. www.nature.com/articles/s41...
meetings.embo.org/event/25-str...
When predictions meet experiments: the next challenges in structural biology
Building on the success of the 2022 EMBO Workshop “When Predictions Meet Experiments: The Future of Structure Determination”, this second edition continues the journey at the interface of computation…
meetings.embo.org
🎓 2 PhD Positions @scadsai.bsky.social Join "Learning to Explain: Inference of Chemical Reaction Mechanisms" under Prof. Dr. Julia Westermayr & Prof. Dr. Peter F. Stadler 📍 Leipzig | 75% TV-L E13 | Start: Fall 2025 🔗 Apply: scads.ai/about-us/job... (T14.1 & T14.2) #PhDPosition #ML #CompChem
Job Offers - ScaDS.AI Dresden/Leipzig
Find your new dream position among the job offers at ScaDS.AI Dresden/Leipzig. We are looking forward to your application!
scads.ai
are you studying biophysical phenomena @interfaces, then you can actually already use our newest toolbox! featuring membranes and biopolymers analyses in 2D! 🫓 🏄 🦠🧬🧶 🪢
bioRxiv Biophysics@biorxiv-biophys.bsky.social · last yr.2Danalysis: A toolbox for analysis of lipid membranes and biopolymers in two-dimensional space https://www.biorxiv.org/content/10.1101/2025.02.27.640563v1
Our research presented today at @pasteur.fr ! @bussigio.bsky.social will give a seminar sharing our approaches to reconstruct #RNA dynamics using #moleculardynamics, #cryoEM, secondary structure prediction, and #DMS probing. Host @bonomimax.bsky.social
Come to #accelerate25 the premier conference on #aiformaterials #selfdrivinglabs #chemsky Please RT
Acceleration Consortium@accelerationc.bsky.social · last yr.Registration for the 2025 Accelerate conference in Toronto (Aug 11–14) opens soon! Be the first to know: zr2z766pxls.typeform.com/accelerate25
extremely useful for huge systems! #HPC powered by 65k... #pushingScalingLimits #compchemsky #compchem
CompBioPhys@compbiophys.bsky.social · last yr.🤩 Highly optimized software running on a SOA #HPC cluster provides sufficient #computing power to #simulate #biomolecular systems at the mesoscale of viruses and organelles, and potentially small cells in the near future... Want to know more? Check out our paper 📑 in #JCC 🔗 doi.org/10.1002/jcc....
