Hannah Trivett

@hannahtriv.bsky.social

Research Fellow in the @halllab.bsky.social at @unibirmingham.bsky.social | microbiomes | microbial genomics | @amiposts.bsky.social OHAG member👩🏼‍💻 💩 🧬

Take a read of my latest blog piece for the BlueBEAR blog on how I used the university’s HPC to study the gut microbiome and resistome of patients living with liver cirrhosis #metagenomics #microbiome #genomics #HPC #cirrhosis #scicomm #ECR #blog

UoB Advanced Research Computing delivering BEAR services@uob-bear.bsky.social · 2d ago

Using BlueBEAR HPC, @hannahtriv.bsky.social in the @halllab.bsky.social at @unibirmingham.bsky.social analysed hundreds of GB of metagenomic data, revealing microbial changes and antimicrobial resistance patterns in liver disease. blog.bham.ac.uk/bear/2026/08... #Microbiome #Genomics #HPC #BlueBEAR

Hannah Trivett

Podcaster era: unlocked. 🔓🎙️ Thank you @microbiologysociety.org for inviting me to represent our research team on the podcast! It was fantastic to discuss what we can learn from involving the public in microbial genomics research, why public engagement matters, and how it can shape science #SciComm

Microbiology Society@microbiologysociety.org · 2mo ago

📣 Episode 185 is out now! Lilly welcomes Dr Hannah Trivett at University of Birmingham to discuss her latest publication bringing patient and public involvement (PPI) and microbial genomics research together for the first time ever. Listen in wherever you get your podcast🔗 https://microb.io/44VqpWs

Happy to share our paper “Public and patient involvement: exploring public partnership in pathogen whole-genome sequencing research and its data visualisation” is now published, highlighting the importance of PPI in research. #PPI #Genomics #Pathogen www.microbiologyresearch.org/content/jour...

Public and patient involvement: exploring public partnership in pathogen whole-genome sequencing research and its data visualisation

Pathogen genomics is increasingly used in publicly funded studies and has important implications for understanding infectious diseases and their spread. However, unlike many other research areas, it has seen little patient and public involvement (PPI), thereby missing opportunities to enhance both research processes and outcomes. This project addressed that gap by exploring the potential contribution of PPI to pathogen genomics, using whole-genome sequencing (WGS) data visualisation as an exemplar. Following ethical approvals, three 2 h PPI workshops involving five public contributors and six academic contributors were held online. Sessions were documented using visual meeting notes. Workshops were audio-recorded, transcribed and analysed using an iterative thematic analysis. Two interconnected themes were identified. First, effective public involvement required collaborative sense-making, achieved through co-producing a shared knowledge base, establishing consistent terminology and developing effective practices for knowledge exchange. Second, participants highlighted three priority areas for meaningful PPI in future pathogen genomics research: (i) prioritising research questions, (ii) contributing to decisions about data collection and use and (iii) supporting the communication of findings. Although pathogen genomics is technically complex, this did not prevent productive discussion about how, where and why PPI could be integrated into research. Expanding PPI in this area could help align pathogen WGS research with patient priorities, inform approaches to data governance and improve the accessibility of research outputs to the public. Realising this potential, however, will require active engagement from researchers in the field.

microbiologyresearch.org

A great afternoon of discussions on how to communicate science in the news media, hosted by Science Media Centre. It’s really highlighted the value of effective science communication and collaboration with journalists to translate important science

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To top off a great few days of science, I had the pleasure of presenting my work on liver disease at #MMEG2025, coming runner up for best 15 min talk! A big thank you to the organisers of MMEG2025 and their sponsors for hosting a great conference this week in Birmingham, looking forward to the next🧬

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Bacterial genomes encode a rich repertoire of antiphage systems, but we still know surprisingly little about when these systems are actually expressed. In this preprint, Lucas Paoli et al, ask what shapes antiphage systems expression in native contexts. www.biorxiv.org/content/10.6...

Environment and physiology shape antiphage system expression

Bacteria and archaea encode on average ten antiphage systems. Quorum sensing, cellular, or transcription factors can regulate specific systems (CRISPR-Cas, CBASS). Yet, a systematic assessment of anti...

biorxiv.org

Such an engaged audience at #EESMicrobiome with lots of great questions after my talk! Big thanks to the organisers for inviting me to present some of the teams recent early life #microbiome work. Conference has been AMAZING so far!

EMBL Events@events.embl.org · 12mo ago

🦠🔬 We’re starting #EESMicrobiome Session 3: Early life microbiome – development and impact 🔸Chaired by Tami Lieberman (MIT) & Mani Arumugam (University of Copenhagen) 🎤 First talk: 'Exploring early life microbiome interactions' by Lindsay Hall @unibirmingham.bsky.social @halllab.bsky.social

A little tool I've developed: ExpEvoAnalyzer (github.com/samhorsfield...) - a snakemake pipeline that compares isolate paired-read data from an experimental evolution study to a reference isolate, producing functionally-annotated SNPs in a presence/absence matrix.

GitHub - samhorsfield96/ExpEvoAnalyzer: A workflow to analyse experimental evolution data.

A workflow to analyse experimental evolution data. - samhorsfield96/ExpEvoAnalyzer

github.com