The Matrisome Project
@matrisome.bsky.social
The Matrisome Portal is maintained by Dr. Alexandra Naba and the Naba lab @nabalabuic.bsky.social and aims to help disseminate data, tools, resources and reagents to advance #ECM research. https://matrisome.org
If you are annotating SDRFs from public proteomics data or your own submission, and you have access to #Claude; #gemini #OpenAI #Codex or ClaudeCode, you can use #SDRF-skills; really simple github.com/bigbio/sdrf-...
GitHub - bigbio/sdrf-skills: Agentic plugins to annotate SDRF using Claude; Codex; Cursor; Gemini
Agentic plugins to annotate SDRF using Claude; Codex; Cursor; Gemini - bigbio/sdrf-skills
github.com
Excited to launch #MatriSpace: a framework for mining #SpatialTranscriptomic data with a focus on matrisome genes co-developed with @valerioizzi.bsky.social 🔗 @biorxivpreprint.bsky.social: doi.org/10.64898/202... 🔗 ShinyApp: matrinet.shinyapps.io/matrispace/ #ECM #Matrisome #MatriTool #OpenAccess
Our newly redesigned #Matrisome Portal is now live: matrisome.org. Built to meet #ADA standards, the new site improves accessibility, usability, and overall experience for all. Take a look and let us know what you think! #Accessibility #ADACompliance
📣 Publication alert: Our paper, “A guide to building the matrisome interactome: from computational predictions to experimental validation” is now published in @febsj.bsky.social! 📄 The paper is available in #OpenAccess at: doi.org/10.1111/febs... #ECM #Matrisome #Interactome #SystemsBiology
Data drop! We just released an updated list of anti-ECM antibodies curated from the #HumanBioMolecularAtlasProgram Organ Mapping Antibody Panels #OMAP and the 9th release of the Human Reference Atlas #HRA. Check it out: sites.google.com/uic.edu/matr...
Rijuta Lamba, Alexandra Naba @nabalabuic.bsky.social, @valerioizzi.bsky.social and team present MatriCom, a single-cell RNA-sequencing data mining tool to infer cell–ECM interactions. Highlight: journals.biologists.com/jcs/article/... Article: journals.biologists.com/jcs/article/... #OpenAccess
Perfect timing on the last day of the 2025 #Collagen Gordon Research Conference! Our paper, in collaboration with @valerioizzi.bsky.social describing #MatriCom, a tool to infer ECM communication systems from scRNA-Seq datasets, is now published in @jcellsci.bsky.social! doi.org/10.1242/jcs....
MatriCom, a single-cell RNA-sequencing data mining tool to infer cell–extracellular matrix interactions
Highlighted Article: MatriCom is a web application devised to mine single-cell RNA-sequencing datasets to infer extracellular matrix (ECM)–ECM and cell–ECM communication systems across cell population...
doi.org
Congratulations to Pat Caswell (@integrintraffic.bsky.social) & Alexandra Naba (@matrisome.bsky.social) who will be vice-chairs of the 2027 Fibronectin, Integrins & Related Molecules GRC and chairs of the 2029 meeting!
Our manuscript describing #MatriCom, a web application we developed in collaboration with @valerioizzi.bsky.social to infer #ECM communication systems from #scRNASeq datasets is now available on @biorxivpreprint.bsky.social!
bioRxivpreprint@biorxivpreprint.bsky.social · 2y agoMatriCom: a scRNA-Seq data mining tool to infer ECM-ECM and cell-ECM communication systems https://www.biorxiv.org/content/10.1101/2024.12.10.627834v1
MatriCom: a scRNA-Seq data mining tool to infer ECM-ECM and cell-ECM communication systems https://www.biorxiv.org/content/10.1101/2024.12.10.627834v1