Matthieu Montes
@matthieumontes.bsky.social
Professor detached@CNRS/Sorbonne Université, director of CQSB lab UMR7238, ERC and IUF fellow, co-founder@qubit_pharma, structural bioinformatics, Chemoinformatics, molecular visualization
In Cerisy for a humanities colloquium: Autour du Cnam : réinventer la singularité dans l’enseignement supérieur [2026] share.google/y7KUihp55s2M... Amazing exchanges and discussions, thanks for the invitation!
Autour du Cnam : réinventer la singularité dans l’enseignement supérieur [2026]
Colloque de Cerisy - 2026 Dirigé par Michèle ANTOINE, Gilles GAREL et Christine MUSSELIN, du vendredi 18 septembre au mardi 22 septembre
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EMBO Practical Course Integrative modelling of biomolecular interactions 26 – 30 April 2027 | Athens, Greece Great speakers/teachers (and organizers 😊) Registration Deadline: 8 November 2026 meetings.embo.org/event/27-bio...
More information on the method at ieeexplore.ieee.org/abstract/doc...
Efficient GPU Computation of Large Protein Solvent-Excluded Surface
The Solvent-Excluded Surface (SES) is an essential representation of molecules which is massively used in molecular modeling and drug discovery since it represents the interacting surface between mole...
ieeexplore.ieee.org
VTX 2026 beta is out, previewed last week at the Tinker Developers meeting in @sorbonne-universite.fr features Real-time analytical SES, new GUI and Python bindings check it out at github.com/VTX-Molecula... @sguionni.bsky.social @maximemaria.bsky.social @jppiquem.bsky.social
Releases · VTX-Molecular-Visualization/VTX
High-performance molecular visualization software. Contribute to VTX-Molecular-Visualization/VTX development by creating an account on GitHub.
github.com
Statistically significant chuckles: who is using humour at scientific #conferences? #ProcB #BiologicalSciencePractices #TheoreticalBiology royalsocietypublishing.org/rspb/article...
It was a pleasure to host you @matthieumontes.bsky.social A recording of the webinar will shortly be available on our YouTube channel: www.youtube.com/c/bioexcelcoe
BioExcel CoE
BioExcel (www.bioexcel.eu) is the leading European Centre of Excellence for Computational Biomolecular Research. We are core developers of major software applications and focus on application Exascale...
youtube.com
Really enjoyed the webinar and the very productive discussions!
BioExcel CoE@bioexcelcoe.bsky.social · 8mo agoIts not too late to register for our #webinar tomorrow 27-Jan, 15:00 CET ➡️ bioexcel.eu/bcjz "VTX: From Real-Time high performance molecular structure and dynamics visualization to integrative modeling of massive molecular systems" #moleculardynamics @matthieumontes.bsky.social
Join us for our #webinar where @matthieumontes.bsky.social will introduce the high-performance molecular-visualization and simulation platform VTX for rapid exploration of massive molecular systems 🗓️ 27 January 2026, 15:00 CET ✍️ bioexcel.eu/bcjz #moleculardynamics #molecularmodeling #visualization
On my way to Marseille for a seminar tomorrow at the afmb lab ! thanks to Karine Alvarez for the invitation!
And the legacy continues! 😊 @amjjbonvin.bsky.social @bioinfo.se @lindorfflarsen.bsky.social #EMBOIntegMod25 ! 🍀🧿
Ezgi Karaca@ezgikaraca.bsky.social · 2y agoThe legendary EMBO Integrative Modeling Course is back! If you want to be in this picture in the 2025 edition, just go ahead and register at meetings.embo.org/event/25-bio... Organized by myself & @amjjbonvin.bsky.social & @arneelof.bsky.social & @lindorfflarsen.bsky.social
Going to Izmir for the meetings.embo.org/event/25-bio... I will talk on monday about interactive molecular visualization and simulation methods! See you there! Thanks to the organizers for the invitation! @ezgikaraca.bsky.social @amjjbonvin.bsky.social @bioinfo.se @lindorfflarsen.bsky.social
Integrative modelling of biomolecular interactions
Experimental structural studies of interactions can be costly, low-throughput, and challenging. Therefore, computational methods aiming to model protein complexes are particularly valuable. The accur…
meetings.embo.org
A junior chair professor position in computer science / chemoinformatics / structural bioinformatics is available in my former team in CNAM, Paris, France Please contact Nathalie Lagarde for more details (nathalie.lagarde@lecnam.net)
Annonce_CPJ_Cnam | Nathalie Lagarde
Un poste de Chaire de Professeur Junior (CPJ) est ouvert dans notre équipe de bioinformatique structurale appartenant au laboratoire GBCM du Conservatoire National des Arts et Métiers (Paris). 👉 Profi...
linkedin.com
Only a few days left to apply for our EMBO course with a great lineup of speakers and tutors! Please feel free to RT! Course website: meetings.embo.org/event/25-bio... Organizers: myself, @amjjbonvin.bsky.social @bioinfo.se @lindorfflarsen.bsky.social Location: www.ibg.edu.tr
New publication out! doi.org/10.1093/bioi... VTX is open source and freely accessible for non commercial use! github.com/VTX-Molecula... Builds available at vtx.drugdesign.fr
GitHub - VTX-Molecular-Visualization/VTX
Contribute to VTX-Molecular-Visualization/VTX development by creating an account on GitHub.
github.com
1/3 #compchem Preprint: "Pushing the Accuracy Limit of Foundation Neural Network Models with Quantum Monte Carlo Forces & Path Integrals" 💫: arxiv.org/abs/2504.07948 An end-to-end multi-level exascale strategy to produce highly accurate quantum chemistry datasets (energies & forces): DFT/QMC/sCI.
New paper out pubs.acs.org/doi/abs/10.1...
Combining Molecular Docking and Pharmacophore Models Predicts Ligand Binding of Endocrine-Disrupting Chemicals to Nuclear Receptors
Nuclear receptors form a family of proteins capable of accommodating a wide variety of small molecules in their ligand binding domain, ranging from therapeutic compounds to endocrine-disrupting chemic...
pubs.acs.org
Talked about VTX and UDock at the Scripps yesterday, thanks @ludovicautin.bsky.social for the invitation and to Stefano Forli, Arthur Olson and Michel Sanner for the warm welcome and the great discussions! Next stop, Chicago!
Presenting UDock2 and recent developments on VTX at the APS meeting in Anaheim! Very rich interactions, thanks to the organizers for the invitation!
Exciting day yesterday at Mizzou where I presented our recent advances in molecular simulation and visualization and had super cool exchanges with the faculty and students in physics, comp sci and biochemistry departments. Thanks to Prof Xiaoqing Zou for the invitation! Next stop Anaheim
New pre-print from the team! Interactive visualization of large molecular systems with VTX: example with a minimal whole-cell model from @cg-martini.bsky.social arxiv.org/abs/2503.07181 VTX is available on GitHub github.com/VTX-Molecula... and at vtx.drugdesign.fr
Interactive visualization of large molecular systems with VTX: example with a minimal whole-cell model
VTX is an open-source molecular visualization software designed to overcome the scaling limitations of existing real-time molecular visualization software when handling massive molecular datasets. VTX...
arxiv.org
Presented UDock and VTX today at Loria in Nancy, thanks Yasaman Karami and Ahmed Khakzad for the kind invitation!
New visual of our work in progress on VTX. Illustration of the analytical SES of ribonuclease A (PDB ID 1DFJ) rendered with the upcoming pathtracer of VTX. The Analytical SES is generated with the method described in 10.1109/TVCG.2024.3380100 that will be available in an upcoming version of VTX.
New pre-print from the team! arxiv.org/abs/2501.12750 More news (and illustrations/videos) incoming about current developments ! VTX is available on GitHub github.com/VTX-Molecula... and at vtx.drugdesign.fr
VTX: Real-time high-performance molecular structure and dynamics visualization software
Summary: VTX is a molecular visualization software capable to handle most molecular structures and dynamics trajectories file formats. It features a real-time high-performance molecular graphics engin...
arxiv.org
The legendary EMBO Integrative Modeling Course is back! If you want to be in this picture in the 2025 edition, just go ahead and register at meetings.embo.org/event/25-bio... Organized by myself & @amjjbonvin.bsky.social & @arneelof.bsky.social & @lindorfflarsen.bsky.social
Detailed thread about the amazing work of @pltc.bsky.social about future representations and renderings that will be available in the upcoming version of VTX
pltc@pltc.bsky.social · 2y agoThe renderer used for the previous molecular illustrations has been developed to showcase an analytic molecular surface construction method on GPU targeting large molecular complex.
Back from Limoges and the excellent PhD thesis of Cyprien Plateau-Holleville who notably developed a super efficient meshless representation of the SES for large molecular systems hal.science/hal-04550117 that will be available in the upcoming version of VTX vtx.drugdesign.fr
Efficient GPU computation of large protein Solvent-Excluded Surface
The Solvent-Excluded Surface (SES) is an essential representation of molecules which is massively used in molecular modeling and drug discovery since it represents the interacting surface between mole...
hal.science
