Hi! Check out my #RStats session on #R ’s object systems at @libdrstats.bsky.social - classes, objects, methods, & how all this drives our #bioinformatics workflows. Niche? Yes. But fascinating!⚙️🔧🧠✨ 🎥 youtu.be/EEqIJaDIb1I 🛝 speakerdeck.com/manishabarse... @lieberinstitute.bsky.social #OOP #S3 #S4

[2025-10-10] OOP in R: Understanding S3 and S4 systems

YouTube video by Leonardo Collado Torres

youtu.be

Proud to announce our paper ‘Transcriptomic Analysis of the Human Habenula in Schizophrenia’ from @lieberinstitute.bsky.social is the cover article for the November issue of the American Journal of Psychiatry! 🧠 #HabenulaLIBD #snRNAseq #Habenula doi.org/10.1176/appi...

Transcriptomic Analysis of the Human Habenula in Schizophrenia | American Journal of Psychiatry

Objective: The objective of this study was to define the molecular neuroanatomy of the human habenula (Hb) and identify transcriptomic differences between brains of individuals with schizophrenia and ...

doi.org

Hi everyone! Check my journal club talk on the latest review paper: Cell-type deconvolution methods for spatial transcriptomics 🧬 🎥 www.youtube.com/watch?v=xDjF... 🛝 speakerdeck.com/manishabarse @lieberinstitute.bsky.social #Bioinformatics #SpatialTranscriptomics #Cell-TypeDeconvolution

[2025-08-13] Journal club: Cell-type deconvolution methods for spatial transcriptomics

YouTube video by Leonardo Collado Torres

youtube.com

Hi everyone! Check my beginner-friendly #RStats talk at @lieberinstitute.bsky.social on reshaping, joining, binding, & set ops- all #tidyverse way! Shared simple demo to handle data better! 🎥 youtu.be/5L133h_1SNo 🛝 speakerdeck.com/manishabarse... @libdrstats.bsky.social #DataWrangling #DataScience

[2025-05-30] Reshaping data, Joining tables

YouTube video by Leonardo Collado Torres

youtu.be

Presented at @lieberinstitute.bsky.social #RStats club on pseudobulk analysis using pseudoBulkDGE()📊 A handy wrapper for DE analysis following OSCA guidelines-shared a demo & walked through the method!✨ 🎥 youtu.be/0OkWBLyLrfg 🛝 speakerdeck.com/manishabarse... @libdrstats.bsky.social #Bioinformatics

[2025-05-02] pseudobulk analysis with pseudoBulkDGE()

YouTube video by Leonardo Collado Torres

youtube.com

Hi! Check my journal club talk: smart ML method to deconvolute pooled snRNA-seq using sex-specific expression🧬 Thanks @daylab.bsky.social & @rphillips3.bsky.social for this approach🙌 🎥 youtu.be/zpeCFwYfV3o 🛝 speakerdeck.com/manishabarse #snRNAseq #ML #Bioinformatics @lieberinstitute.bsky.social

[2025-04-23] Journal club on "[...] deconvolution of pooled snRNA-seq using sex-dependent gene expr"

YouTube video by Leonardo Collado Torres

youtu.be

Hi Bluesky! 👋 I'm new here and excited to share that I recently gave my first presentation for the #RStats club! I talked about the metrics summary CSV files generated by SpaceRanger for #Visium spatial transcriptomics. Looking forward to connecting and learning together! 🌟

LIBD rstats club@libdrstats.bsky.social · 2y ago

Manisha Barse presented with us for the first time! She explained the metrics summary CSV files generated by SpaceRanger when processing #Visium spatially-resolved transcriptomics 📊 🛝 speakerdeck.com/manishabarse... 📽️ youtu.be/cJqsbDh0ZtI Data viz #RStats @lieberinstitute.bsky.social #10xGenomics