Dr. Jennifer Glass (she/her)

@methanojen.bsky.social

I study tiny cells with global impacts. I work to diversify and democratize science. #notinourname #stopthegenocide #goodtrouble

We have a bunch of MAGs sitting in GenBank queues for many months. I run all MAGs through PGAP so they’re BLAST-able & assigned accessions, which I refer to when discussing genes in MAGs in papers. This has ground to a halt w/ NCBI processing delays in recent years. Is there anyway to expedite this?

Happy birthday to brilliant trailblazing US #geologist & prof Florence Bascom (1862-1945) 👩🏼‍🔬🐡🧪⚒️ #histsci who championed women’s education, & used polarizing microscopes for detailed petrographic analysis to show that rocks previously identified as sedimentary were in fact metamorphosed volcanic 🧵

 My linocut portrait of geologist Florence Bascom as a young woman from neck up, in blue, looking at the viewer with her curly hair pulled back wearing a blouse with large lace collar on green vinyl. Behind her are two geological cross-sections with layers carved with different patterns to indicate different rock materials in black. Below on either side are two circular diagrams: these are thin sections of rhyolite printed in pale beige, brown, and black.

“The U.S. National Science Foundation X-Labs (NSF X-Labs) initiative is designed to launch and scale a new generation of organizations focused on independent research, development and innovation.” We have those, thanks, they’re called universities and national laboratories.

Environmental microbiology folks - let's discuss! I worry about repercussions of this massive removal. We use UniProt tools to look for gene neighborhoods even on small contigs in low quality MAGs and metagenomes in UniProt. This would take that function away?

EMBL-EBI@ebi.embl.org · 9mo ago

UniProt is changing its reference proteomes resource. Reference proteomes will remain in UniProtKB, while others will move to UniParc. Read more about these changes: www.ebi.ac.uk/about/news/u... 🧬 🖥️ Uniprot is a collaboration between EMBL-EBI, @sib.swiss & the Protein Information Resource.

📣 New bacterial order name change alert! 🦠 The uncultivated alphaproteobacterial order (formerly TMED127) is now "Methylaequorales" in @seqcode.bsky.social 📝 New AEM paper on these marine methylotrophs: journals.asm.org/doi/epub/10.... 🙏 Special thanks @rodriguez-r.bsky.social & SeqCode team

Diel cycle of lanthanide-dependent methylotrophy by TMED127/Methylaequorales bacteria in oligotrophic surface seawater

journals.asm.org