The Nextstrain team has been focused on extending the usability of Auspice and auspice.us. See the blog post for details: nextstrain.org/blog/2026-07...
Nextstrain: Auspice and auspice.us updates
Nextstrain blog post from 2026-07-09; author(s): The Nextstrain team
nextstrain.org
Our discussion forum has moved from discussion.nextstrain.org to nextstrain.discourse.group. You can continue to use your existing account at the new location. Old links will be automatically redirected. Please contact us if you experience any issues.
Nextstrain is happy to announce a major update to our tuberculosis analysis, making it our first real-time (continually updated) analysis for a bacterial pathogen. Please see our new blog post for details: nextstrain.org/blog/2025-11...
Nextstrain: New Resources for Tuberculosis
Nextstrain blog post from 2025-11-17; author(s): Kim Andrews, James Hadfield, Victor Lin, Jover Lee, Jennifer Chang
nextstrain.org
On Oct 1, 2025, GISAID informed us that they had ended updates to the flat file of SARS-CoV-2 genomic sequences and associated metadata that we had used to update Nextstrain analyses since Feb 2020. GISAID's stated rationale was that their "resources are limited". 1/5
Nextstrain is happy to announce the availability of new resources for mumps, as described in our recent blog post. We welcome any feedback on these new resources! nextstrain.org/blog/2025-09...
Nextstrain: New Resources for Mumps
Nextstrain blog post from 2025-09-24; author(s): Jennifer Chang, Richard Neher, Jover Lee, Kim Andrews
nextstrain.org
Nextstrain is happy to announce the availability of a Rubella dataset — please see our new blog post for details. We welcome feedback from Rubella researchers on these new resources!
Nextstrain: New Resources for Rubella
Nextstrain blog post from 2025-07-24; author(s): John SJ Anderson
nextstrain.org
The Nextstrain team has updated our core pathogen workflows to be compatible with Snakemake v8 or higher and has updated the Nextstrain runtimes to include Snakemake v9. Please see our new blog post for more details:
Nextstrain: Upgrade to Snakemake v9
Nextstrain blog post from 2025-07-17; author(s): The Nextstrain team
nextstrain.org
Happy Friday! We've got a new blog post all about a new feature that was recently added to the Nextstrain CLI: `nextstrain run` This is a foundational component for a new, easier way to re-use Nextstrain workflows, take a look! nextstrain.org/blog/2025-06...
Nextstrain: Introducing `nextstrain run`
Nextstrain blog post from 2025-06-13; author(s): Thomas Sibley
nextstrain.org
Fantastic training by @aphl.org and @unmc.bsky.social (Dr. Shaun Cross) with Uganda CPHL on @nextstrain.org data viz for #mpox & #Ebola Sudan virus. The workshop brought together lab, epi, and IT staff—and by the end, they were building phylogenetic trees for other pathogens too! 🧬🌍 #GenomicEpi
We are happy to announce a new blog post at nextstrain.org, highlighting some recently-added resources for rabies, Lassa fever, and yellow fever virus: nextstrain.org/blog/2025-02... We'd love to hear feedback from any subject matter experts with experience with any of those viruses!
Nextstrain: New Resources for Rabies, Lassa, and Yellow Fever Virus
Nextstrain blog post from 2025-02-21; author(s): Kim Andrews, Jennifer Chang, Richard Daodu, Denise Kühnert, John SJ Anderson
nextstrain.org
We have been aware of an issue with the 1Password browser extension interfering with Auspice views on nextstrain.org and auspice.us. Today, we released a workaround while the 1Password team continues to investigate. More information on our blog: nextstrain.org/blog/2024-12...
Nextstrain: Auspice slow/unresponsive with latest 1Password browser extension
Nextstrain blog post from 2024-12-10; author(s): The Nextstrain team
nextstrain.org
We are pleased to announce the availability of the human metapneumovirus (hMPV) phylogenetic analysis on Nextstrain and its corresponding Nextclade dataset. Read more on our blog: nextstrain.org/blog/2025-01...
Nextstrain: Phylogenetic analysis of Human Metapneumovirus
Nextstrain blog post from 2025-01-09; author(s): Isabel Joia, Richard Neher
nextstrain.org