Sanjat Kanjilal
@sanjatkanjilal.bsky.social
Group leader | Dept of Medical Microbiology | Amsterdam University Medical Center @amsterdamumc.bsky.social | research machine learning for dx/tx/prevention of infectious diseases
I'll see you in Malta!
💡 Take your clinical trial from concept to completion. Join this onsite course and learn how to design, conduct and report a clinical trial through expert-led sessions and workshops covering every stage of the clinical trial journey. Register today: https://ow.ly/lStL50Zrgqa #IDSky #clinmicro
prospect.org/2026/06/01/c... Good on the author to highlight the actions of Mass General Brigham, not their words
Corporations and the Crisis of Care - The American Prospect
The U.S. suffers from a mass exodus of primary care doctors, as medical practice is dictated by corporate masters at the expense of physicians and patients.
prospect.org
Tallinn; summer 2026 +1 for Odesa, a great Ukrainian restaurant somewhat hidden in the Old Town. Pictured is a herring pate with horseradish vodka compliments of the chef, and a red wine from a Ukrainian grape I’ve never heard of. All very lekker!
It was a pleasure to talk at the @ampath.bsky.social #AMPEurope2026 conference in Tallinn this morning on the future of AI in CMID I presented a vision for pre- and post-analytic AI decision support and a key (missing) piece needed to get there Slides available at drive.google.com/file/d/1I5Ib...
New paper out in Antimicrobial Agents and Chemotherapy! journals.asm.org/doi/10.1128/aac.01661-25 1/7
Prevalence and genetics of cefepime resistance among the AmpC-producing organisms Citrobacter freundii complex, Enterobacter cloacae complex, and Klebsiella aerogenes | Antimicrobial Agents and Chemot...
Organisms bearing chromosomal AmpC beta-lactamases present significant treatment challenges. They are intrinsically resistant to beta-lactams that are both potent inducers of and good substrates for A...
journals.asm.org
MGH/BWH ID fellow class of 2014 Same friends, different day
1/12 🎉 Our paper on colonization pressure (CP) and nosocomial pathogen acquisition is out in Nature Communications! Lots of surprising findings. www.nature.com/articles/s41...
Using electronic health records to assess the relationship between colonization pressure and nosocomial pathogen acquisition - Nature Communications
Hospitalised patients are at risk of acquiring infections, and the risk increases when there is a higher prevalence among ward co-occupants, known as colonisation pressure. Here, the authors built an ...
nature.com
Note to self: If your audience is nodding off, point to centuries old stained glass windows to liven things up
Analyses of oral antibiotic use over 8 years in the Swedish Prescribed Drug Register and fecal metagenomes data of 14979 individuals found evidence that antibiotics can have long-lasting impacts on the gut microbiome. https://www.nature.com/articles/s41591-026-04284-y
"Biology is…about propensities, potentials, vulnerabilities, predispositions, proclivities, interactions, modulations, contingencies, if/then clauses, context dependencies, exacerbation or diminution of preexisting tendencies.” - Robert Sapolsky, from his book Behave What a f-in great quote!
🚨 New pre-print! 🚨 In the largest study of its kind to-date, we investigate the ecological and evolutionary mechanisms driving within-patient evolution of antimicrobial resistance (AMR). Read here: www.biorxiv.org/content/10.6... , and follow along with this thread, discussing our findings (1/21)
biorxiv.org
Here is an announcement for everybody who is sick and tired on the attacks on science and scientists. It has been months in the making, but now we are ready to fight back. First episode airs tomorrow 5pm UK. New episode every friday. Incredible guests lined up. open.substack.com/pub/protagon...
Announcing: Science Counterpunch
Fighting back for science & scientists was never more urgent
open.substack.com
Learned today that New Year’s Eve in Amsterdam is absolutely insane
OpenEvidence valued at >$10B with $100M in revenue. Not much in this post about if it improves patient care..but that's old hat www.linkedin.com/posts/ethan-...
Over 100 million Americans will be treated this year by a physician using AI. The Information just reported that OpenEvidence ("ChatGPT for doctors") will become 1 of only 8 “applied AI” sta...
Over 100 million Americans will be treated this year by a physician using AI. The Information just reported that OpenEvidence ("ChatGPT for doctors") will become 1 of only 8 “applied AI” startups to r...
linkedin.com
This month's @natrevmicro.nature.com is fantastic! Here @amsterdamumc.bsky.social, my team is building from scratch a next-gen clinical micro informatics infrastructure to support real-time pathogen surveillance; explicitly connecting the hospital to public health www.nature.com/nrmicro/volu...
Nature Reviews Microbiology - Volume 24 Issue 1, January 2026
Viral pathogens and global health, inspired by the Focus issue.
nature.com
Today I am very proud to announce the release of the Antibiotic Resistance Microbiology Dataset - Mass General Brigham (ARMD-MGB; physionet.org/content/armd...) , as part of an NIH-funded collaboration led by Jonathan Chen at Stanford. (1/6)
Antibiotic Resistance Microbiology Dataset Mass General Brigham (ARMD-MGB) v1.0.0
ARMD-MGB contains detailed microbiology and clinical metadata for >225,000 patients and >970,000 cultures collected over 10 years
physionet.org
When you can watch an entire series with a thoroughly unlikeable main character, you know the director and actor have done an amazing job! Also, the attention to detail in the set pieces somehow manages to capture the beauty of that time and place without empty sentimentality, brilliant
www.huffpost.com/entry/histor... No easy solutions, but a lot of excellent points. It may be that tomorrow’s leaders will be those who have the courage to fail
I Set A Trap To Catch My Students Cheating With AI. The Results Were Shocking.
"Students are not just undermining their ability to learn, but to someday lead."
huffpost.com
Now out in @natcomms.nature.com Kudos to @tylim.bsky.social and @jameshay.bsky.social for a huge effort and thanks to all the collaborators for their hard work. See the final version here: www.nature.com/articles/s41...
nature.com
How do you track an ongoing epidemic, especially without large-scale testing? We explored the use of routinely collected RT-qPCR cycle threshold values in our new preprint out now! doi.org/10.1101/2024... 1/
This week is World #AntimicrobialResistance Awareness week This article collection spans the breadth of #AMR across pathogens (bacteria, viruses, fungi, parasites), covers epidemiological monitoring, diagnostics, treatment, etc
Antimicrobial resistance: a silent pandemic
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