There is a new and faster way to install the main SeqFu binary: curl -fsSL "https://telatin.github.io/seqfu2/install.sh" | sh (of course, BioConda is still an easy way to get it installed) 1/2
SeqFu · FASTX tools
@seqfu.bsky.social
Fast manipulation and inspection of FASTA and FASTQ files from the bioinformaticians at the Quadram Institute https://telatin.github.io/seqfu2/
Would you like to inspect FASTQ files from your terminal? `seqfu less` can do that! You can scroll, search for motives and see intuitive colored bars representing quality values. Check it out here: telatin.github.io/seqfu2/tools...
SeqFu has a new website! We tried to make it nicer, but also introduced new in-browser applets. Try these two: - 📊 STATS to calculate N50 and plots, for one or more files, or - 🔍 LESS to have a small preview of FASTQ files with quality, oligo match and more. telatin.github.io/seqfu2/
SeqFu has everything you need to conquer all your bases and supercharge your NGS pipelines
SeqFu is brewing a new interactive tool that improves the existing ‘SeqFu view’…
💾 any2fasta 0.8.1 is released! The FASTA format is now 40 years old (Pearson & Lipman) and any2fasta makes it easy for your scripts and pipelines that accept FASTA to also accept other formats, even if compressed! eg. .gbk.gz #bioinformatiocs #microbiology #genomcs github.com/tseemann/any...
Release Next time I'll try to be FASTA · tseemann/any2fasta
New features Option -k is keep processing even when some inputs fail option -g to include GBK version suffix option s to strip desc from>id desc in ID lines Support for PDB protein structure forma...
github.com
The Best Practice in Microbiome Research presents protocols covering the design of ethical, inclusive studies, sample collection and genomic sequencing, bioinformatics processing of data and statistical analysis.
New book shares Quadram’s Best Practice in Microbiome Research - Quadram Institute
Researchers from the Quadram Institute have developed an open access book to help ensure best practice in microbiome research.
buff.ly
🎁 5 Community leadership UK Node member Maria Traka (@quadraminstitute.bsky.social) was elected co-lead of the ELIXIR Europe Food and Nutrition Community, strengthening UK leadership at European level 🔗 elixiruknode.org/news/2025/ma... #adventcalendar #leadership
Maria Traka brings UK leadership to ELIXIR Food & Nutrition Community
In March 2025, Dr Maria Traka was appointed as the new co-Lead of the ELIXIR Food & Nutrition Community, joining Dr Jildau Bouwmann (ELIXIR Netherlands) ...
elixiruknode.org
Announcing myloasm, a new long-read (ONT R10/PacBio) metagenome assembler that I've been working on during my postdoc in the Heng Li lab (@lh3lh3.bsky.social). myloasm-docs.github.io
myloasm - metagenomic assembly with (noisy) long reads
myloasm-docs.github.io
Pixi has shebang support like uv now! 😍 ``` #!/usr/bin/env -S pixi exec --spec bat -- bash -e ``` pixi.sh/dev/advanced...
Shebang - Pixi by prefix.dev
None
pixi.sh
Are you a forward-thinking scientist with expertise in bacterial foodborne pathogens or microbial spoilage? 🦠 Check out our current Group Leader vacancy ⤵️ 💷 Competitive salary and support package 🗓️ Apply by 14 April 2025 ➡️ buff.ly/ml6AT1G
Did you know that you can have a quick peek at FASTQ qualities with `seqfu view`? You can pipe it to less to scroll the whole dataset: seqfu view FILE.fastq | less -SR #seqfuTips #bioinformatics
