🆕 Vacancy! We're looking for a well-rounded Postdoctoral Research Scientist to join a collaborative team working on the study of microbiome-host interactions using New Approach Methodologies with living microbiomes. 💷 £39,000 to £46,500 🗓️ Apply by 17 August 2026 ➡️https://buff.ly/ulMNG5O
Aldert Zomer
@aldertzomer.bsky.social
Associate Professor at Utrecht University, Infectious Diseases & Immunology. (meta)genomes, AMR, zoonotic pathogens. Cookie and cake connoisseur. publications: https://scholar.google.com/citations?hl=nl&user=VHHhpoAAAAAJ&view_op=list_works&sortby=pubdate
Like Artemis/ACT but wish it was easier to install and more modern? Try Seqhiker. 🧬 Native desktop app (no Java) for Windows/mac/linux 🖱️ Drag-n-drop FASTA/GenBank/GFF3/BAM/VCF files 🔍 Genome browsing and ACT-style comparison ✨ Themes (customisable) and a Vim mode Docs: seqhiker.readthedocs.io
The Seqhiker's Guide
seqhiker.readthedocs.io
🚨Join us at the University of Geneva! We're seeking an outstanding junior researcher to apply for an ERC or SNSF Starting Grant with our institutional support in host–pathogen interactions, bacteriology, virology, parasitology, or mycology. www.unige.ch/medecine/mim... Please share!
Open call : MIMOL Junior Group Leader’s application for a Starting Grant - Microbiology and molecular medicine - UNIGE
unige.ch
Just saw that Olymvax reported the efficacy of their phase 3 clinical trial results of their S. aureus vaccine. 73% efficacy. Impressive. static.sse.com.cn/disclosure/l... (in Chinese but translation is straight forward using AI)
static.sse.com.cn
Excited to see our story published in @natmicrobiol.nature.com today! It’s been a long journey. We answered a major outstanding question: why does E. coli encode two aPBPs, yet only one plays a critical role in ensuring reliable PG fortification during cell division?
🚨 New in @natmicrobiol.nature.com! We reveal how the antibiotic target PBP1b fortifies the E.coli division site against osmotic rupture. Proud this was completed in our independent labs @dmf-unil.bsky.social, with @avettiger.bsky.social. Congratulations to all authors! 🦠❄️🔬 #teamtomo bit.ly/3SCbOg1 👇
“A slow, heavy desert lizard called the Gila monster can go months between meals. In the early 1990s, a physician-scientist named John Eng grew curious about how it keeps its blood sugar steady across those long fasts… Years later, a synthetic version of that molecule became the first GLP-1 drugs”
“The entire National Science Foundation budget is less than what we spent in the first week of the war with Iran. The National Institutes of Health,… accounts for a fraction of 1 percent of all federal spending” www.nytimes.com/2026/06/20/o...
Welcome for complicated UTIs w/ resistant bugs but oral carbapenem lower the last barrier protecting this important antibiotic class Convenience for patients must not become convenience for prescribers, otherwise we may pay with increased carbapenem resistance #AMR www.cidrap.umn.edu/antimicrobia...
FDA approves new oral antibiotic for complicated urinary tract infections
Utebzi is the first oral carbapenem antibiotic approved in the US.
cidrap.umn.edu
Pros and cons to this new #UTI treatment option #UTISky
Welcome for complicated UTIs w/ resistant bugs but oral carbapenem lower the last barrier protecting this important antibiotic class Convenience for patients must not become convenience for prescribers, otherwise we may pay with increased carbapenem resistance #AMR www.cidrap.umn.edu/antimicrobia...
No, it's because only 3.1 percent of the Dutch population live in poverty as opposed to 20 percent of the British population. The Guardian really needs to stop publishing irresponsible lifestyle crap as news. (The Avondvierdaagse is a nice tradition though.) www.theguardian.com/lifeandstyle...
Dutch children are unusually happy and healthy. Is it because of the Avondvierdaagse?
Once a year, Dutch kids, parents and teachers take part in a walking festival, heading out for four nights in a single week to explore their neighbourhoods, exercise and make friends. It’s a tradition...
theguardian.com
I wrote about AI in academia. "PhD-level thinking", LLM bias, grunt work, alignment, AGI, data center water use, AI politics -- something for everyone.
Thoughts on AI in academia
PhD-level thinking, LLM bias, alignment, AGI, data centers, and AI politics
open.substack.com
This is awful to hear, describing how Sean Eddy (HMMER, infernal, pfam, rfam) has been defunded. The letter said his work "had been determined to be of absolutely no value to the US taxpayer, and therefore it was being specifically terminated," www.npr.org/2026/05/21/n...
Researchers say the Trump administration is finding new ways to punish science
Even with federal grants largely restored, scientists say the Trump administration is still preventing those funds from reaching them. The consequences, they say, are already becoming clear.
npr.org
Wong et al. present IQ-TREE version 3, with new features including mixture models, gene and site concordance factors, integration with phylogenomic divergence time estimation, and a fully featured sequence simulator. 🔗 doi.org/10.1093/molbev/msag117 #evobio #molbio #compbio
The people who believe that generative AI development & adoption everywhere is the ultimate goal & the first order predictor of success are insufferable. So are the people who think that AI can't ever produce anything useful and that everything they do produce is "slop". I miss reasoned arguments.
I'm looking for an enthusiastic student to join my team as a PhD candidate on archaeal genome evolution 🦠💻 Work in beautiful Utrecht, at @binfutrecht.bsky.social, an international group full of caring, amazing scientists, and with frequent cake breaks! www.uu.nl/en/organisat... Please share! 🙏
uu.nl
"De ongebreidelde concentratie van macht en geld in de handen van een kleine groep is niet alleen oneerlijk, maar ondermijnt zichzelf door de feitelijke en emotionele ontkoppeling die daaruit volgt." Uitstekende #column van Robbert Dijkgraaf. Tom en Daisy, houd ze tegen. www.nrc.nl/nieuws/2026/...
Column | Onverschillige mensen
Robbert Dijkgraaf: De groeiende achteloosheid in de geopolitiek en het bedrijfsleven heeft alles te maken met de toenemende ongelijkheid, schrijft Robbert Dijkgraaf.
nrc.nl
Get your applications in today or tomorrow if you're interested!
Interested in a *staff computational scientist* position? We are looking for an experienced computational biologist (ideally with microbiology experience) to support published packages while also driving new research. Pay range $73k-$111k w excellent benefits. careers.peopleclick.com/careerscp/cl...
Do you have a PhD (or equivalent) in biology, bioinformatics, computer science or a related discipline? Check out our current vacancy ⤵️ 💷 £37,500 to £43,350 🗓️ Apply by 17 May 2026 ➡️ buff.ly/tUT3tBw
Just out in npj Antimicrobials & Resistance @natureportfolio.nature.com www.nature.com/articles/s44... We looked at what actually happens to AMR on pig farms when you reduce antimicrobial use through real-world, coaching-based interventions.
Changes in antimicrobial resistance profiles of Escherichia coli and the metagenome on Dutch pig farms after antimicrobial usage interventions - npj Antimicrobials and Resistance
npj Antimicrobials and Resistance - Changes in antimicrobial resistance profiles of Escherichia coli and the metagenome on Dutch pig farms after antimicrobial usage interventions
nature.com
The molluscivorous red knots may eat seagrass rhizomes. To examine this ability, bird were fed plant-based rabbit pellets before being reversed back to protein-rich pellets. They rapidly adjusted to eating rabbit food! eur01.safelinks.protection.outlook.com?url=https%3A...
Excited to share our new paper out today in @science.org 🎉 We show that HGT via natural competence drives diversification of chromosomal integrons in V. cholerae 🤩 Below a 🧵 on key findings incl. background on natural competence in V. cholerae 1/ #microsky #phagesky www.science.org/doi/10.1126/...
science.org
The newly established NeCEN Utrecht is looking for a #cryoEM scientist! www.uu.nl/en/organisat... Work with a new Krios 5 + pFIB and support cutting-edge life science research. 📍 Utrecht | 🗓 Apply by 30 April Please share with your network!
Cryo-electron microscopy scientist
Join our team to contribute to the operation and innovation of state-of-the-art cryo-electron microscopes and empower groundbreaking research.
uu.nl
Our faculty has a particularly interesting PhD position open on antimicrobial resistance, effects of antibiotics treatment on the microbiome and resistome, restoration of the equine microbiome using FMT. www.uu.nl/en/organisat... Please contact Mathijs Theelen, email address in the link below.
PhD candidate in Equine Intestinal Microbiome and Resistome
Join this PhD project to study how the equine gut microbiome and resistome can improve gastrointestinal health and combat antimicrobial resistance.
uu.nl
Announcing a new tool for "denoising" long-read amplicon sequences: savont. Savont enables amplicon sequence variants (ASVs) directly from nanopore (or HiFi) long reads. Tested on 16S nanopore amplicons -- seems to work okay. 1/4 github.com/bluenote-157...
GitHub - bluenote-1577/savont: Amplicon sequencing variants from 16s ONT R10.4 / HiFi long reads
Amplicon sequencing variants from 16s ONT R10.4 / HiFi long reads - bluenote-1577/savont
github.com
We’re looking for a Summer Intern to generate microscopy videos of bacteria bursting in response to administering antibiotics as part of a public education video on the uses of antibiotics and risks of misuse 🔬 🗓️ Apply by 5 January ➡️ buff.ly/YlUQUho
💾 Shovill 1.4.1 has been released! The best way to de novo assemble microbial genomes from Illumina FASTQ. Major fixes to the SKESA module, plasmid mode for the Spades module, and more error checking. #bioinformatiocs #genomics #microbiology github.com/tseemann/sho...
Releases · tseemann/shovill
⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads - tseemann/shovill
github.com
If you ever need to fuzzy search some DNA, sassy is your tool. Please spread the word; I think many people just outside my own circle could benefit from this :) cc @rickbitloo.bsky.social github.com/RagnarGrootK...
MetaPointFinder: A new approach for detecting mutation-driven antimicrobial resistance directly from metagenomic reads. Fills a major gap in current resistome profiling by capturing chromosomal AMR mutations that metagenome tools miss. github.com/aldertzomer/...