It might be just me but slack messages from bots easily slip my mind
Arata Wakimoto
@arataw.bsky.social
Living a life of troubleshooting🫠 🐶Univ. of Washington, JSPS Overseas Postdoc fellow ←🌱Univ. of Tsukuba, Japan. Arata Wakimoto / 脇本 新 JP/EN #StemCells, #DevBio, #EvoDevo Love☕ #Coffee and 👾 #Games
Stem Cell & Developmental Biology Early Career Symposium was one of the greatest event I've ever attended. Good scientific input, meeting new people, sharing excitement/failure. I am feeling so lucky that this was held at right across the street I walk everyday!
One of the best moments in conferences is to meet someone who reached to the same problem independently🤝
www.biorxiv.org/content/10.6... In vivo reconstruction of the cell lineage history of a developing mouse with DNA Typewriter, from zygote to late organogenesis 😍
The elephant in the room: impact factor 🐘 @jamesbriscoe.bsky.social and @amjeve.uk openly discuss their views on the impact factor and how the field of developmental biology is perceived through its lens. thenode.biologists.com/the-elephant... #DevBio #AcademicPublishing #ImpactFactor
The elephant in the room: impact factor - the Node
As new journal impact factors are released this week, it's worth considering what an impact factor really is and whether the academic community should put
thenode.biologists.com
Xenophagocytosis blockade enhances interspecies chimerism: Cell www.cell.com/cell/fulltex... Great to see this on Cell!
Xenophagocytosis blockade enhances interspecies chimerism
Host macrophages limit interspecies chimerism via xenophagocytosis, whereby stressed donor cells expose phosphatidylserine as an “eat-me” signal. Blocking xenophagocytosis successfully enhances donor ...
cell.com
Now online! Xenophagocytosis blockade enhances interspecies chimerism
Xenophagocytosis blockade enhances interspecies chimerism
Host macrophages limit interspecies chimerism via xenophagocytosis, whereby stressed donor cells expose phosphatidylserine as an “eat-me” signal. Blocking xenophagocytosis successfully enhances donor chimerism and enables efficient exogenic organogenesis.
dlvr.it
Opus4.8 keeps failing to call list_events from Gcal MCP since yesterday. Sonnet4.6, Opus4.6, Opus4.7 can call it. Weird! Might be related to the Fable's issue?
This visual timer is by far the best buy of the year for my setup
1/ Thrilled to share our latest: an exciting collaboration across the @jshendure.bsky.social, @leastarita.bsky.social, @nobuhamazaki.bsky.social and @dschweppe.bsky.social labs! 🧵 below- #SystemsBiology #SCBEM #MultiOmics #Gastruloids www.nature.com/articles/s41...
The proteomic landscape and temporal dynamics of human and mouse gastruloid development - Nature Cell Biology
Garge et al. use experimentally matched mass spectrometry and RNA-sequencing to quantify proteins, phosphosites and transcripts across four key stages of human and mouse gastruloid development.
nature.com
Happy to see our new paper on benchmarking RNA/protein dynamics in human and mouse gastruloids in Nature Cell Biology! 🎉 www.nature.com/articles/s41...
The proteomic landscape and temporal dynamics of human and mouse gastruloid development - Nature Cell Biology
Garge et al. use experimentally matched mass spectrometry and RNA-sequencing to quantify proteins, phosphosites and transcripts across four key stages of human and mouse gastruloid development.
nature.com
Inhibition of MAFB and PI3K/AKT Signaling for Hereditary FSGS with Multicentric Carpotarsal Osteolysis : Journal of the American Society of Nephrology journals.lww.com/jasn/abstrac...
journals.lww.com
0.33g mitigates muscle atrophy while 0.67g preserves muscle function and myofiber type composition in mice during spaceflight - goo.gl/scholar/MGaj1S Congrats for the team!!
goo.gl
William Foege has died. He was a central architect of smallpox eradication, pioneering surveillance-driven ring vaccination when vaccine supply was limited. That strategy helped eliminate the deadliest human pathogen we’ve ever known. www.nytimes.com/2026/01/24/u...
William H. Foege, Key Figure in the Eradication of Smallpox, Dies at 89
nytimes.com
Please 🔁 My group at UBC received an allocation from the school to apply for the Canada Impact+ Training Awards (postdoc). Everything is moving fast but please email me in 48 hours with a CV if you are outside Canada and interested😎 Yachie lab: yachie-lab.org sshrc-crsh.canada.ca/en/funding/o...
Canada Impact+ Research Training Awards
The Canada Impact+ Research Training Awards are a one-time initiative designed to recruit international or returning Canadian students and postdoctoral researchers to Canada. These awards support the recruitment of doctoral students and postdoctoral researchers in priority areas, helping build capacity, strengthen the research ecosystem and enhance Canada’s global competitiveness.
sshrc-crsh.canada.ca
It's my honor to be selected as one of the inaugural SeaBridge Fellows!👏 seabridge.uw.edu/2026/01/22/s...
SeaBridge Selects Inaugural Cohort of Eight Fellows from UW and Fred Hutch - SeaBridge
The first cohort of postdoctoral researchers has been selected for the SeaBridge Fellowship, a translational research training program affiliated with the Seattle Hub for Synthetic Biology (Seattle Hu...
seabridge.uw.edu
I never knew the title of the original BLAST paper was 'A Greedy Algorithm for Aligning DNA Sequences'. I just came across it and it's too cool!🤯 www.liebertpub.com/doi/10.1089/...
liebertpub.com
The WRF has awarded three-year postdoctoral fellowships to a new cohort of 12 early-career researchers who will pursue innovative, high-impact projects. 📝 See the full list including Drs. Winston Dredge, Nastacia Goodwin, Stefany Cruz, and Nathaniel Ritz: https://bit.ly/3L0DhEM
www.biorxiv.org/content/10.6... Extremely fine tuned. genuinely admiring!
Human trunk embryoids with patterned anterior-posterior and dorsal-ventral body axes: utility for understanding human development and disease
Human embryoid models enable mechanistic studies of development and disease. We generated trunk embryoids from human pluripotent stem cells that recapitulate posterior trunk formation at Carnegie stag...
biorxiv.org
Lovely little pre-Christmas present to see this out @natcellbio.nature.com! Some 🔥 new results in here since the biorvix incl (1) a new RARE-GFP reporter ✳️🙌, (2) additional NMP quantification 🔢, (3) no neural tube patterning on RA inhibition 🙅 etc. Enjoy! 😍 www.nature.com/articles/s41...
Modelling co-development between the somites and neural tube in human trunk-like structures - Nature Cell Biology
Makwana, Tilley et al. generate human stem cell-based trunk-like structures approximating Carnegie stage 13–14 of development. They use them to model and study the development of the thoracic and lumbar trunk.
nature.com
when we say we want more streets to be pedestrianized, this is what we mean
Congratulations to Karel Svoboda and @jshendure.bsky.social on their election to the National Academy of Medicine (@nam.edu)! Election to the Academy is one of the highest honors in health and medicine. #NAMmtg More on their journeys to this achievement: alleninstitute.org/news/karel-s...
Karel Svoboda and Jay Shendure elected to National Academy of Medicine
The honor recognizes leaders who have demonstrated outstanding achievement and made lasting contributions to the advancement of the medical sciences, health care, and public health
alleninstitute.org
www.biorxiv.org/content/10.1... Simplified In Vitro Generation of Human Gastruloids for Modelling Early Development
Simplified In Vitro Generation of Human Gastruloids for Modelling Early Development
The purpose of this study was to optimize the efficiency and cost of human gastruloid formation by testing and adjusting individual parameters using as examples two distinct human pluripotent stem cel...
biorxiv.org
Plasmidsaurus's 50$ RNA-seq is just amazing. I won't do qPCRs anymore
🦖 Something HUGE just hatched. Plasmidsaurus now offers RNA sequencing for gene expression analysis: • As fast as 3 day turnaround • $50/sample for academia, $80 for industry • Up to ~10M unique transcript 3’ end reads per sample • Interactive results Explore Plasmidsaurus RNA-Seq today.
Twenty-four years ago today, our paper “A forkhead-domain gene is mutated in a severe speech and language disorder” was published: www.nature.com/articles/350.... A personal thread about the ups & downs of the journey we took to get to that point....1/n 🗣️🧬🧪
Today in @nature.com, we present our work leveraging functional genomics and human blastoids to uncover a human-specific mechanism in preimplantation development driven by the endogenous retrovirus HERVK. Special thanks to the reviewers whose comments improved our manuscript a lot! rdcu.be/eI3tD
A human-specific regulatory mechanism revealed in a pre-implantation model
Nature - Genetic manipulation of blastoids reveals the role of recently emerged transposable elements and genes in human development.
rdcu.be