Artem K. Efremov

@artemefremov.bsky.social

Biophysicist. Lab website: http://artemefremovlab.com/

Does chromatin density heterogeneity within the cell nucleus affect nucleosome stability? If so, what are the potential molecular mechanisms underlying this phenomenon? Answers to these questions can be found in the preprint of our recent study: www.biorxiv.org/cgi/content/...

Effect of nuclear electrostatic potential on the nucleoplasmic distribution of histones and nucleosome stability

Differences in the density of heterochromatic and euchromatic regions are often assumed to play an important role in determining the transcriptional state of chromatin by influencing its accessibility to transcription factors. Yet, experiments show that even the most densely packed chromatin domains are readily accessible to transcription factors. Thus, the molecular mechanisms underlying differences in the transcriptional states of hetero- and euchromatin remain poorly understood. In this study, using electrically charged mEGFP probes, we demonstrated that heterochromatin and euchromatin differ not only in density but also in the magnitude of the local electrostatic potential. Furthermore, the nucleoplasmic distribution of electrically charged proteins, such as histone-chaperone complexes, was found to correlate with the local electrostatic potential. Estimates based on experimental data have also shown that the difference in electrostatic potentials between heterochromatic and euchromatic regions could lead to unequal nucleosome stability in them, which was successfully confirmed experimentally. Subsequent theoretical calculations showed that this could shift the balance in the DNA-binding competition between transcription factors and nucleosomes, thereby explaining experimental observations that heterochromatin is less transcriptionally active than euchromatin. Overall, our study suggests the existence of a nuclear electrostatic potential-mediated pathway that may be involved in the regulation of gene transcription. ### Competing Interest Statement The authors have declared no competing interest.

biorxiv.org

In memoriam Fazly Ataullakhanov was a biophysicist with a rich heritage, and a strong scientific legacy. An ethnic Tadjik, born in Samarkand (Soviet Uzbekistan), educated in Moscow, made his best scientific contributions in English, collaborating with international researchers in the USA. /1

A monochrome portrait of Fazly Ataullakhanov - a man in his fifties sitting in a seminar room

Our joint experimental research with Gary Ying Wai Chan's group from HKU, dedicated to the first of its kind mechanosensitive endonuclease activated by DNA mechanical stress, was published in Nature Communications! Congratulations to Fei He and Long Jie from our lab! 🎉 www.nature.com/articles/s41...

ANKLE1 processes chromatin bridges by cleaving mechanically stressed DNA - Nature Communications

ANKLE1 senses DNA tension and negative supercoiling, enhancing cleavage of stretched, supercoiled DNA to resolve chromatin bridges, highlighting its unique mechanosensitive role in maintaining genome ...

nature.com

These were amazing several days at the conference organized by MBI and Max Planck Society. One of the best mechanobiology conferences I have ever seen, with three hundred researchers from all over the world, including some of the most famous ones.

Mechanobiology Institute@mbisg.bsky.social · last yr.

@artemefremov.bsky.social tested a semi-analytical model that integrates experimental data and theory, revealing the importance of adaptor protein elasticity and local molecular clutch-ECM interactions in cell mechanosensing and force transduction during adhesion. #MBIMPG2025