CrowDsourcing COndensate Database & Encyclopedia
@cdcode.bsky.social
CD-CODE is a comprehensive, manually-curated database for biomolecular condensates and proteins developed by Agnes Toth-Petroczy lab @tothpetroczylab.bsky.social @mpi-cbg.de https://cd-code.org
☀️v2.3 release is here! #CDCODE has grown - we've added new entries, cleaned up duplicates, and refreshed the c-mods page view! 📋See more release details: cd-code.org/release 📬Stay in the loop about condensate news - subscribe to our newsletter: tinyurl.com/CD-CODEnews #IDP #RBP #DatabaseUpdate
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Are you at the #EMBO @embl.org #EESPhaseSeparation symposium? Let's meet at poster # 105 (Follow Helix A!) today 🙌 Thanks to the organizers for this opportunity to interact with the #condensate #research community! @events.embl.org @mpi-cbg.de @tothpetroczylab.bsky.social cd-code.org
CD-CODE Database
Scientific database for biomolecular condensates research
cd-code.org
CD-CODE v2.2 RELEASE is live🤩 Our #database grew: 💡10 new #condensates 💡639 new #condensate - #protein connections 💡107 new c-mods 💡10 new #condensatopathies 🟣Find your favorite condensate cd-code.org and 👀see more details about the #release: cd-code.org/release #cdcode #IDP #RBP #DatabaseUpdate
My first manuscript in MPI colours! With @tothpetroczylab.bsky.social, we show that AlphaFold PAE-derived contact probabilities are well calibrated to the fraction of true interface contacts across experimentally determined protein dimers. www.biorxiv.org/content/10.6...
Our pre-holiday database update is live! 🎄CD-CODE v2.1 is here. Adding 🎁 11 new condensates 🎁 276 new proteins We now track a total of 13,983 condensate-protein relationships, plus 253 c-mods and 113 condensatopathies. Dive into the data and see more details about the release: cd-code.org/release
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Our enhanced knowledge base for condensates is online @narjournal.bsky.social! Congratulations to the first authors @kkuznetsova.bsky.social and @mscheremetjew.bsky.social and all co-authors & curators! What a wonderful team effort to advance condensate research! 🤩 @mpi-cbg.de @hymanlab.bsky.social
CrowDsourcing COndensate Database & Encyclopedia@cdcode.bsky.social · 9mo agoCD-CODE 2.0 is now published in @narjournal.bsky.social 🤩 CD-CODE 2.0 stores #biomolecular #condensates and their #protein and nucleic acid components and now includes repository of 🦠 infectious condensates, 💊 condensate-modulating compounds, and 🩺 condensatopathies 👀 doi.org/10.1093/nar/...
CD-CODE 2.0 is now published in @narjournal.bsky.social 🤩 CD-CODE 2.0 stores #biomolecular #condensates and their #protein and nucleic acid components and now includes repository of 🦠 infectious condensates, 💊 condensate-modulating compounds, and 🩺 condensatopathies 👀 doi.org/10.1093/nar/...
☀️summer is here - and so is CD-CODE v1.10 release!🤩 💡CD-CODE has now 719 manually curated #condensates (and ~40% are #human associated!) 💡Check out new #condensates and updated #protein - condensate connections at cd-code.org #Bioinformatics #DatabaseUpdate #IDR #RNP #RBP #cdcode
😊 I had the pleasure to turn this exciting @cellpress.bsky.social paper into a video-abstract. Check it out! youtu.be/0REvwcuOao8 Thanks to the authors for writing the script and to @hymanlab.bsky.social and to @mpi-cbg.de for sharing it!
Max Planck Institute of Molecular Cell Biology and Genetics@mpi-cbg.de · last yr.Related science sketch video by @marionamec.bsky.social www.youtube.com/watch?v=0REv...
We're really excited that CD-CODE is now cross-referenced by #UniProt and has already been included in the latest release: www.uniprot.org/release-note... Spreading knowledge about #biomolecular #condensates 🥳 @ebi.embl.org @sib.swiss @mpi-cbg.de @tothpetroczylab.bsky.social @hymanlab.bsky.social
UniProt
UniProt is the world's leading high-quality, comprehensive and freely accessible resource of protein sequence and functional information.
uniprot.org
The @tothpetroczylab.bsky.social together with the @albertilab-tud.bsky.social developed SHARK-capture to detect recurring patterns (motifs) in intrinsically disordered protein regions (IDRs). Publication in Protein Science. www.mpi-cbg.de/news-outreac...
🚀 Exciting Opportunity 🚀 Do you have a passion for structural biology? We're hiring at @PDBeurope! 🌟 Apply now to help annotate biological data 💻 🔬 🔗 embl.wd103.myworkdayjobs.com/en-US/EMBL/d... Closing date: April 6, 2025 #JobOpening #StructuralBiology #Bioinformatics #ScienceJobs #Hiring
🍃CD-CODE update v1.09 is here!🍃 👀Check out the new #biomolecular #condensates at cd-code.org 👀We're continuing to update #Protein - #condensate connections and resolve issues! Join us to share your #condensate #expertise as a contributor: cd-code.org/signup #Bioinformatics #DatabaseUpdate #IDR
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The research group of Agnes Toth-Petroczy @tothpetroczylab.bsky.social is looking for an experimental Postdoc (m/f/d) in protein evolution of biomolecular condensates. Apply now! careers.mpi-cbg.de/jobs/5312959...
Follow our research group leaders @mpicbg.bsky.social to get updates on their science activities! go.bsky.app/3gGPAgM
Get news from science institutes and universities, located in Dresden, Germany. Please add missing ones in the comments. go.bsky.app/BgRhagp
We are looking for a Student Helper in International Culture and Policies. Apply now and join us! careers.mpi-cbg.de/jobs/5276094...
Our PICNIC tool predicts condensate-proteins regardless of their structural disorder across organisms @naturecomms.bsky.social. Congratulations to @annaha-poetry-art.bsky.social for developing the algorithm and to Hari @hymanlab.bsky.social for the experiments! www.nature.com/articles/s41...
PICNIC accurately predicts condensate-forming proteins regardless of their structural disorder across organisms - Nature Communications
Here the authors report PICNIC (Proteins Involved in CoNdensates In Cells), a machine learning algorithm that predicts approximately 40–60% of proteins form condensates in various organisms, showing n...
nature.com
✨Winter CD-CODE update to v1.08!✨ ❄️ New #biomolecular #condensates added (total ⚪: 680) ❄️ #Protein - #condensate connections updated ❄️ Species attributes fixed 🤩 👀Check the current version here: cd-code.org Join us to become a contributor: cd-code.org/signup #DatabaseUpdate #Bioinformatics #IDR
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If you are a PhD student and like protein disorder (or want to learn more), Birthe Kragelund @bbkrage.bsky.social and Kristian Strømgaard are organizing a PhD course on How IDPs work 🧶🧬🧪 Note the cost if you are not at a Danish university. Details: phdcourses.ku.dk/DetailKursus...
Hello Bluesky! We're thrilled to announce an open PhD position on exploring controlling condensate membrane attachment and exocytosis! Collaborate across Europe in the ComeInCell EU network. Apply now! Details: www.comeincell.org & www.ru.nl/en/working-a...
ComeInCell – Doctoral Network on Integrative Synthetic Cell Design
comeincell.org
Thank you, @rnadavid.bsky.social for compiling this starter pack 🤩 Join the condensate crowd! #condensates #phaseseparation #granules #IDPs
David Kuster@rnadavid.bsky.social · 2y agoBiomolecular condensate starter pack! Trying to compile & to bring together biomolecular condensate enthusiasts & critics! Please join this non-exhaustive (sorry!) collection & just ping me for addition. #condensates, #phaseseparation, #granules, #IDPs go.bsky.app/NFqmffa
The Martin lab has an open postdoc position at the interface of #cytoskeleton and #condensate biology, in a fantastic research community! If interested, do not hesitate to contact us: mocel.unige.ch/research-gro... Please RT!
🔊☎️Calling the hive mind of the #Condensate Community of #bluesky: Join us in curating the CD-CODE! Do you have a favorite condensate or are researching some that are not yet in cd-code.org? We want your input and expertise!🧠 🔗Easy sign-up here: cd-code.org/signup and add a new condensate 🎦⤵️
🚨Condensate of the Month is Stress Granule! #StressGranules (#SGs) are dynamically forming cytoplasmic condensates that form in response to various cellular stresses. 🤩In CD-CODE there are more than 10 species and more than 1300 #protein associations described for SGs.
🍂🌿Latest #CDCODE release: 🥳Version 1.07 is here: cd-code.org 🌟We focused on improving #species attributions and updating missing #condensate features. Help us with your condensate expertise!🧠 Join us to become a contributor: cd-code.org/signup
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