Conesa Lab
@conesalab.bsky.social
News from the Genomics of Gene Expression Lab at @i2sysbio.bsky.social @elcsic.bsky.social. Led by @anaconesa.bsky.social
🎉 ¡Ya están publicadas las becas #JAEIntro 2026 del @csic.es ! Una gran oportunidad para estudiantes de Grado y Máster de iniciarse en la carrera científica y participar en proyectos punteros. 🔬✨ 🔗 Consulta la convocatoria completa aquí: sede.csic.gob.es/tramites/pro...
We’re honored to host an incredible keynote lineup for #VALT2026 in Valencia! 🇪🇸 🔹 Ana Conesa 🔹 Angela Brooks 🔹 Hagen Tilgner 🔹 Eduardo Eyras 🔹 Matthew Ritchie 🔹 Gloria Sheynkman 🔹 Kin Fai Au Join us to discuss the future of long-read sequencing. 🧬 Register: www.biobam.com/valt-registr...
VALT Registration
VALT 2026 will bring together leading researchers and professionals from around the world to share the latest advances and ideas in long-reads transcriptomics. This event offers an excellent opportuni...
biobam.com
Europeans, assemble!! The ConesaLab needs you to join us in a COST action. Please, reach out if you can help us 🤝
Tuesday was an amazing day. The @i2sysbio.es organized the II Jornada de Colaboración Público-privada. We could meet the private sector and share our dreams and concerns with them. www.i2sysbio.es/communicatio...
More than 70 people attend the 2nd Public-Private Collaboration Workshop organised by I2SysBio
<p><strong>The Institute of Integrative Systems Biology (I2SysBio), a joint centre of the CSIC and the University of Valencia, held its Second Public-Private Collaboration Workshop under the title ...
i2sysbio.es
Check out this interview by a local newspaper of @anaconesa.bsky.social and @carolinamonzo.bsky.social A dive into the world of long reads transcriptomics and aging! www.lasprovincias.es/sociedad/can...
La revolución de la secuenciación génica: una lupa sobre el envejecimiento y las enfermedades que nos afectan al cumplir años | Las Provincias
La secuenciación de lectura larga permite analizar el envejecimiento celular con precisión inédita, abriendo nuevas vías para comprender y retrasar este proceso
lasprovincias.es
ChatGPT Plus July at ConesaLab was packed! 🌞 From hosting Roc Martin, to poolside SQANTI3 chats, to teaching & presenting at LongTREC & ISMB/ECCB. Science, sun, & lots of RNA! ☀️🧬 Read the full story 👉 shorturl.at/UoE8y
July: From Valencia’s pool to Liverpool | Genomics of Gene Expression
As summer has finally arrived, things in the ConesaLab have taken a more relaxed tone. To begin the month, Roc Martin came to visit us to learn about long-read transcriptomics. Roc was a participant…
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Hello everybody! Great news from the lab, as Julen Santiago, one of our PhD Candidates, has done an amazing contribution to the SQANTI-verse. He has fixed tappAS! 🤩 Go to tappAS GitHub to download its latest relase and have fun! github.com/ConesaLab/ta...
GitHub - ConesaLab/tappAS: This repository contains the source code for the tappAS application. See README for details.
This repository contains the source code for the tappAS application. See README for details. - ConesaLab/tappAS
github.com
Checkout our latest blogpost, with a recap of @anaconesa.bsky.social amazing trip to reach Norwich! conesalab.uv.es/longtrec_of_...
Sustainability on Action | Genomics of Gene Expression
It all began as the best ideas begin, with a simple yet effective What if… ? One day Ana asked us and herself, What if we were more active towards sustainability when travelling? How can I bring…
conesalab.uv.es
We are so glad to be part of a doctoral network as incredible as @longtrec.bsky.social Saving the world at the same time as enjoying science and friendship!
LongTREC@longtrec.bsky.social · last yr.A brief summary of the #LongCyclingForFuture bike trip that our LongTREC bikers have made from London to Norwich, passing via Cambridge. Join us to congratulate them on this adventure while raising awareness of the carbon footprint impact of scientific travel. @anaconesa.bsky.social
📣 We have kicked off at the Earlham Institute, and everyone is to learn all about #LongReadsTranscriptomics at our #LongTREC Summer School. Starting with an introduction of our network from @anaconesa.bsky.social and a quick getting to know our participants - both trainers and trainees!
One of our doctoral candidates, @tianyuanliu.bsky.social, has designed a unique T-shirt for our LongTREC bikers —promoting both our project and our sustainability initiative. #LongCyclingForScience #Teamwork
Ana Conesa@anaconesa.bsky.social · last yr.This is going to be so much fun!!! Do not miss our #LongCyclingForSciene adventure! from Valencia to Norwich by train & bike, posting about science and bcsustainability @pacbio.bsky.social @nanoporetech.com @iscb.bsky.social @csic.es @hitseq.bsky.social @bcbhubcsic.bsky.social @sebibc.bsky.social
We’re kicking off a video series to showcase our network and its mission. 🎥 Watch @anaconesa.bsky.social introducing our project and why raising sustainability awareness in science is so important. @i2sysbio.es @csic.es #LongCyclingForScience 🚴🌎 #LongReadsTranscriptomics 🔬 #Outreach4Science ✍
Last day at the @segenetica.bsky.social conference is dedicated to teaching and outreaching. Encarna Guillén, president of the Spanish human genetics society opens the session talking about genetics and medicine from an academic point of view. Spain doesn’t have a genetic specialist in medicine yet
The best active sustainability thread that you will see today. Putting things into action is what matters in the long run! Congrats to @anaconesa.bsky.social and all the @longtrec.bsky.social for taking this step foward! 💪
LongTREC@longtrec.bsky.social · last yr.5 days to start our @longtrec.bsky.social Summer School hosted at the @earlhaminst.bsky.social and lead by @anaconesa.bsky.social Follow us to know more about the course and other exciting news! 🤟
ConesaLab is heading to #BioHackathlon2025 in Berlin! We're updating long-read RNA-Seq benchmarks to reflect today’s tools & protocols—building on LRGASP and boosting reproducibility in transcriptomics. #LongReadRNA #Bioinformatics #ELIXIR shorturl.at/C7aS6
BioHackathon Europe
Find out about the 2025 BioHackathon Europe, where hackers get together to make life science research easier.
shorturl.at
🚀 SQANTI-verse Cards are here! ✨ If you want to get'em all, just follow these steps: 1️⃣ Use one of the SQANTI tools from our Github 2️⃣ Generate amazing data and publish your results 3️⃣ Tag us when you share your publication We’ll send you a card! 8 are already available & more are coming 🌌 #SQANTIverse
Transcriptomics in the era of long-read sequencing go.nature.com/421ZTJm #Review by @carolinamonzo.bsky.social, Tianyuan Liu & @anaconesa.bsky.social @conesalab.bsky.social @i2sysbio.bsky.social
Transcriptomics in the era of long-read sequencing - Nature Reviews Genetics
Advances in long-read sequencing are driving the implementation of these technologies for transcriptome profiling. The authors provide a comprehensive guide to long-read RNA sequencing, including expe...
go.nature.com
So proud to see @carolinamonzo.bsky.social publishing yet another fantastic paper about transcriptomics. Check out her review that has just been published in Nature Review Genetics ;-) shorturl.at/KeDAf
Transcriptomics in the era of long-read sequencing
Nature Reviews Genetics - Advances in long-read sequencing are driving the implementation of these technologies for transcriptome profiling. The authors provide a comprehensive guide to long-read...
nature.com
It's finally out!!!! Our review on long-reads transcriptomics was published in @natrevgenet.bsky.social!! You can have a look at the paper here rdcu.be/efugl! We hope you like it 😀
rdcu.be
Nature Reviews Genetics@natrevgenet.nature.com · last yr.Transcriptomics in the era of long-read sequencing go.nature.com/421ZTJm #Review by @carolinamonzo.bsky.social, Tianyuan Liu & @anaconesa.bsky.social @conesalab.bsky.social @i2sysbio.bsky.social
Single-cell profiling of the human endometrium in polycystic ovary syndrome. #NatureMedicine This study presents a comprehensive cellular atlas of the endometrium during the proliferative phase, comparing women with PCOS to healthy controls. www.nature.com/articles/s41...
Single-cell profiling of the human endometrium in polycystic ovary syndrome - Nature Medicine
A transcriptomic atlas of the endometrium of women with polycystic ovary syndrome uncovers both disease signatures and potential therapeutic targets.
nature.com
🐜🔍 Os presento Ant Hunters, un proyecto de ciencia ciudadana en el que puedes ayudar a investigadores del CSIC a estudiar su biodiversidad. Solo necesitas agua con azúcar y ganas de explorar. 👉 anthunters.github.io #CienciaCiudadana #Hormigas
anthunters.github.io
Introducing MOSim! 🚀 A powerful tool created by @carolinamonzo.bsky.social for simulating bulk & single-cell multi-omics data. Perfect for testing methods & exploring complex biological systems. Available now on GitHub & Bioconductor. #MOSim #MultiOmics github.com/ConesaLab/MO...
GitHub - ConesaLab/MOSim: Bulk and single-cell Multi-Omics ground truth Simulator in R
Bulk and single-cell Multi-Omics ground truth Simulator in R - ConesaLab/MOSim
github.com
Yesterday, to celebrate the day of the Woman in Science, our superstars @anaconesa.bsky.social and @carolinamonzo.bsky.social went to high-schools to showcase and inspire future generations of scientist. 👩🔬
Last week, @quiquevb.bsky.social went to Laussane in Swizterland to attend the Spatial Omics Data Analysis" hosted by @sib.swiss Swiss Institue of Bioinformatics (ELIXIR-CH) in collaboration with the ELIXIR Single-Cell Omics community. So much learnt in one week, amazing! 🧠
Attention people of Bluesky! Today, we had a double celebration. Alejandro has gotten his paper published #ConesaLab 🧑🔬 genome.cshlp.org/content/earl...
Evaluation of strategies for evidence-driven genome annotation using long-read RNA-seq
An international, peer-reviewed genome sciences journal featuring outstanding original research that offers novel insights into the biology of all organisms
genome.cshlp.org
On Monday, @anaconesa.bsky.social gave a summary of this year at ConesaLab for the I2SysBio, and WOW! We end the year with 6 new positions, ready to rock and deliver next year. As well, many papers and tools have been published, like everybody's favorite SQANTI3 or scMaSigPro! Stay tuned for 2025! 🤩
Today, our amazing postdoc @carolinamonzo.bsky.social gave a seminar on Theoretical and Computational Systems Biology and our classic novel tool MOSim. This R package simulates multi-omics bulk & single-cell gene expression & regulatory mechanisms. Perfect for exploring complex cellular systems! 🔬📊
A giant welcome to our newest lab members!! Carlos and Julen to begin their PhD, Pablo for software development within the Oscars project, and great visitors from LongTREC project!! 🎉💃
Ana Conesa@anaconesa.bsky.social · 2y agoThe @conesalab.bsky.social is growing!! Three new members Fabián, Julen and Pablo joined to reinforce our software development team. This month, 4 @LongTREC students are visiting to progress in long-read transcriptomics. One thing stays: lunch together!
🚨 SQANTI3 release alert!! 🚨 v5.3.0 is now LIVE!!! The new release includes better file compatibility, improved parallelization, a wrapper to run QC-filter-resque, and the first release of our newest tool, 👀 SQANTI-reads 🎉! Thanks a lot to the whole team! github.com/ConesaLab/SQ...
Release SQANTI 5.3.0 · ConesaLab/SQANTI3
This release include some new minor features, such as the inclusion of a Dockerfile of sqanti and a wrapper to execute all SQANTI steps at once. Also enhances compatibility for fastq.gz files in sq...
github.com
