🚀 #quantms 1.7.0 released (#Caracas) MS2 transfer learning, #DeepLC, #MS2PIP, #AlphaPeptDeep, advanced rescoring, and onsite phosphorylation scoring are here! 🧵 > github.com/bigbio/quant... > docs.quantms.org/en/latest/in... > quantms.org/home #quantms #proteomics #massspectrometry

OK, here it is. Come work with me at the University of Liverpool making ALL THE AI models from ALL THE prokaryote pangenome data. Heck, we will make models from ALL the pangenomes, even eukaryotes!!! (link below👇) 1/4

A reminder you/your lab can support FlyBase at Cambridge through the following link. Every bit helps. Please share if you yourself can't donate. www.philanthropy.cam.ac.uk/give-to-camb...

Drosophila Genetic Database

The Drosophila Genetic Database, FlyBase, is on the brink of collapse due to the sudden termination of the FlyBase NIH grant, which includes salaries for 5 literature curators based at the University ...

philanthropy.cam.ac.uk

Dr Sian Gramates@drglam.bsky.social · 12mo ago

News via The Transmitter www.thetransmitter.org/community/ha...

New Independent Fellowship position in Microbiology to launch your lab in our department @johninnescentre.bsky.social (UK). We are conducting a broad search in the area of plant-associated microbial interactions. Message me if you have any questions. Apply here: www.jic.ac.uk/vacancies/in...

Independent Fellowship in Plant-Associated Microbial Interactions | John Innes Centre

An exciting opportunity for an Independent Fellowship in Plant-Associated Microbial Interactions has arisen at the John Innes Centre. To read the full job description for this role…

jic.ac.uk

Next up is the structural and functional proteomics with @scheltemalab.bsky.social opening the session with his talk crosslinking for the masses

Our first plenary session starts with @slavov-n.bsky.social telling us about single cell proteomics and moving it to biological function

We are kicking off with the bioinformatics session. Georg Kustacher talks to us about protein covariation to advance the functional annotation of the human proteome. #BSPR2025

Andy talking about PTMeXchange at #BSPR2025. A collaboration between multiple teams PRIDE, Andy's Group, Uniprot and PeptideAtlas.

A good summary of what's going on. If you have the means, you can donate already to the Cambridge side. If you can spread the word, please do. FlyBase touches every field of bio research: cancer, neurology, development, immunity, genetics, evolution, etc... www.thetransmitter.org/community/fl...

FlyBase funding squashed amid Harvard grant terminations

The team behind the Drosophila genetics database is now requesting donations from labs to keep the resource afloat.

thetransmitter.org

Mark A. Hanson@hansonmark.bsky.social · last yr.

URGENT: FlyBase has lost practically all its funding overnight; even user fees are tied up in denied grant funding. 🤬🤯 Any lab using @flybase.bsky.social please donate using the link in post below. This incredible community, on whose backs our #Drosophila labs depend, can't be left out to dry.

Meet us online from Monday 24 - Friday 28 March to find out more about the professional master’s degrees and research opportunities available at Liverpool. Book now ➡️ www.liverpool.ac.uk/postgraduate...

Hotel booking has no map function. So needed to look each one up on separate browser. For women this is & H&S issue. And no where on list of reasons of why we didn't choose cheapest flights/hotels was *our agenda* or SAFETY. Yes I'm still cross.

Bernadette Moore@themoorelab.bsky.social · last yr.

22% mark up on our most recent booking. As this was my first in new Uni I didn't know (not in any of 3 different pages of requirements, instructions & supposed benefits) need to call or email to prove better price for them to match. I'm still cross.

VEuPathDB conducted a survey at the end of 2024 to assess the importance of our resources and to explore potential funding strategies following funding changes. We got 1,862 responses! Huge thanks to everyone who took this survey! We will share the results and survey report this week.

People often ask about this and worth reiterating: there are individual PI's labs that cost more than bioRxiv, which serves the whole world. We are working towards a long-term, stable, distributed funding strategy. It's trival $$. Reminder: Research $10^5 journal paper $10^3, preprint $10^1.

Richard Sever@richardsever.bsky.social · last yr.

I'd also add that in the grand scheme of things it is not a huge cost ($ millions not billions) - there are individual PI labs that operate on a bigger budget. So the community should easily be able to find the resources collectively. It is a rounding error on the research spend. 2/2

At #ECFG17, like at all major scientific conferences worldwide, the talks highlight how science thrives on global collaboration. Borders don’t define discovery - diversity and cooperation do. Meanwhile, U.S. policies seem to be moving in the opposite direction.

Come visit the FungiDB booth at #ecfg17 and meet the @veupathdb.bsky.social team

This looks great, looking forward to trying it out for our genome annotation projects 😀

Alexey Nesvizhskii@nesvilab.bsky.social · last yr.

One of the most significant and challenging projects of my career so far. PepCentric: a scalable computational platform utilizing novel 2-D fragment indexing for rapid peptide-centric searches, enabling proteogenomics searches against billions of spectra in seconds. www.biorxiv.org/content/10.1...

Thank you to all submitting user comments on #FungiDB record pages. This is a great way to share your expertise with others & showcase relevant PubMedIDs. Submit a user comment & pick up a free "Got fungus?" mug. Submit more than 1 to get a chance of winning a T-shirt! @ecfg172025.bsky.social

🎉 Grab Your Free #FungiDB "Got Fungus?" Mug! 🎉 Attending @ecfg172025.bsky.social? Want to get your hands on this stylish mug? It’s easy! Simply share your knowledge about your favourite gene, and this fabulous mug is yours! Don’t miss out! fungidb.org/fungidb/app/...

Feedly just ranked The Proteomics Show as the top Proteomics Podcast of 2025! The fact it is the only proteomics podcast…they…umm… list on their platform doesn’t make it less cool. @benneely.com Thanks @us-hoop.bsky.social for continuing to sponsor the show! Might be a season 7 announcement soon?

3rd March deadline! 1 post = G8 2 posts = G7 (postdoc) Join us to work, using AI for genome annotation Please RP!

Andy Jones@andrewrobertjones.bsky.social · last yr.

Come join us! 3 new posts, using AI, structural bioinformatics and genomics. To work with me, @danielrigden.bsky.social and @veupathdb.bsky.social team. 3 years initially, extendable to 5. Please RP. www.jobs.ac.uk/job/DLT944/b... www.jobs.ac.uk/job/DLU064/s... www.jobs.ac.uk/job/DLU969/b...

Now seems a good time to mention that I haven't yet filled a postdoc position in phylogenetic methods. If you just lost your job, need something temporary, and know something about bioinformatics/statistics/evolution, talk to me.

Joanna Masel@joannamasel.bsky.social · 2y ago

Spread the word that I have a postdoc opening right now, and am also open to PhD applications evol.mcmaster.ca/brian/evoldi.... We have lots of follow up ideas! 15/15

No job ad yet, but I'll be hiring a postdoc at Purdue in population genetics/quantitative genetics/genomics in plants. DM if you have relevant experience and are potentially interested.

Most universities will take on someone with outside funding, and many will automatically give them a TT position at the end (in my school this applies to 5 year fellowships www.sheffield.ac.uk/science/rese...). Schemes like the Wellcome Trust or MRC CDA are open to all irrespective of nationalty.

My university currently has a significant recruiting initiative fellowsandchairs.birmingham.ac.uk

Seeing US science being vandalised is devastating 💔 For anyone in need of a new job: we have several postdoc and PhD positions in computational genomics, cancer epigenetics and immunology available here in Oxford, UK. We still care about DEI, offer 3y+ contracts and do cool science - get in touch!

Come join us! 3 new posts, using AI, structural bioinformatics and genomics. To work with me, @danielrigden.bsky.social and @veupathdb.bsky.social team. 3 years initially, extendable to 5. Please RP. www.jobs.ac.uk/job/DLT944/b... www.jobs.ac.uk/job/DLU064/s... www.jobs.ac.uk/job/DLU969/b...

Bioinformatics Research Associate (Structural Bioinformatics) - Grade 7 at University of Liverpool

Looking for a new job opportunity in academia? Check out this job opening for a Bioinformatics Research Associate (Structural Bioinformatics) - Grade 7 on jobs.ac.uk!

jobs.ac.uk

We are delighted to announce that we have been awarded a Gold #AthenaSwan Award from @advancehe.bsky.social! Thank you to the ISMIB Athena Swan Team who made this all possible! #GenderEquality | #TeamLivUni bit.ly/4jcgcew

🎉 I'm starting my own lab at EMBL-EBI (Cambridge, UK; June 2025) 🎉 We will focus on identifying and characterizing chemical hazards to humans and ecosystems using computational biology methods. I am beginning the search for two postdocs now - stay tuned for more details! ewaldlab.org

Ewald Lab

@ EMBL-EBI. We identify and characterize chemical hazards to both humans and ecosystems with cell profiling data, machine learning, and integrative data analysis.

ewaldlab.org

As a recent recipient of this funding, I can highly recommend it as a means of broadening experiences and networks to support current and future research.

Academy of Medical Sciences@acmedsci.bsky.social · 2y ago

We’ve launched the Cross-Sector Experience Awards, a six-figure fund designed to break down barriers between sectors & accelerate health innovation. With grants of up to £100k, we’re helping talented individuals gain transformative experiences. Read more: ow.ly/VsEc50Upk0m #Grants #LifeSciences

Looking for members for the Biofair Research and Technical Advisory Group biofair.uk/news/2024/bi...

BioFAIR Research and Technical Advisory Group: member vacancies - BioFAIR

The BioFAIR project is establishing a Research and Technical Advisory Group (RTAG). RTAG will play a key role in supporting the delivery of BioFAIR’s mission to assemble and operate a federated world-...

biofair.uk