📍 VI SysBioRio — Nov 3–6, UFRJ, Rio de Janeiro. Registration is open! I'll be talking about personalizing multiscale models with #PhysiBoSS — using bulk RNA-seq, scRNA-seq, and spatial transcriptomics data. More information 👉 www.even3.com.br/vi-sysbiorio...

VI International Course on Theoretical and Applied Aspects of Systems Biology (VI SysBioRio)

VI International Course on Theoretical and Applied Aspects of Systems Biology (VI SysBioRio) - Centro Brasileiro de Pesquisas Físicas - terça-feira, 3 de novembro de 2026

even3.com.br

Nesta quarta-feira as 16h, eu terei a honra de apresentar meu trabalho sobre a construção de modelos multiescala num webinário da área de Física biológica, da Sociedade Brasileira de Física. Access through Zoom: us02web.zoom.us/j/8586171834... Or YouTube: www.youtube.com/live/1F63k3T...

Webinário da BIO - Construção de Modelos Multiescala para Biologia de Sistemas

YouTube video by Sociedade Brasileira de Física

youtube.com

Really excited to share our new @cellpress.bsky.social Cell paper with @fertiglab.bsky.social and colleagues. 1/n www.cell.com/cell/fulltex... @jktgfoundation.bsky.social @itcrtraining.bsky.social @smbmathbiology.bsky.social #mathbio #mathonco @mathonco.bsky.social @deniswirtz.bsky.social

Human interpretable grammar encodes multicellular systems biology models to democratize virtual cell laboratories

We developed a plain text modeling language—a cell behavior hypothesis grammar—to easily build virtual cell models and connect them to data, helping scientists to unlock the hidden dynamics of tissues...

cell.com

Last week to register ! Don't miss this great opportunity

Computational System Biology of Cancer@sysbiocurie.bsky.social · 2y ago

We are welcoming applications to the 8th edition of the International Curie Course on Computational Systems Biology of Cancer, to be held in Paris, September 22-26, 2025. This year the focus will be on multimodal data analysis and network modelling to master cancer hallmarks. 👇 tinyurl.com/57d4ed2v

Two PhD positions to work on important and cool topics. And to make it even better, with some very nice and good people.

Arnau Montagud@arnaumontagud.bsky.social · last yr.

📢 Exciting news! We will soon open two PhD positions at @i2sysbio.bsky.social @csic.es, in research projects in collaboration with the @bsc-cns.bsky.social. Both are related to tools to simulate biological tissues. Here’s the description of the open positions. #PhDpositions #PhDOpportunities 👇

We are welcoming applications to the 8th edition of the International Curie Course on Computational Systems Biology of Cancer, to be held in Paris, September 22-26, 2025. This year the focus will be on multimodal data analysis and network modelling to master cancer hallmarks. 👇 tinyurl.com/57d4ed2v

PhysiCell 1.14.2 will release later this afternoon. Mostly bugfixes and minor refinements, but also exciting new work by Elmar Bucher prepping for a future "PhysiGym" addon for RL etc. Major thanks to @danielrbergman.bsky.social for numerous PRs! Watch @physicell.bsky.social for the release.

At the #Hanami High Level Symposium, my friend and colleagues Adam Smelko is presenting our new @PhysiCell formulation that allows for stretchable cellular membrane! We are still working on this, but I hope we will be able to give you updates vero soon!

A fun FYI: PhysiCell was first publicly presented in 2015, with first open source release in 2016. So let's call 2025 our 10th anniversary! 🧪

Thanks a lot for the kind words Ashlee! Very happy that our tutorial is useful. And of course, we are always available to answer questions and happy to clarify any points!

Ashlee N. Ford Versypt@fordversyptlab.bsky.social · 2y ago

I'm so thankful for this post! I saw it just as two different collaborators were asking us to do things with our ABMs that we hadn't done before. Your tutorials and demos were so clear! Coupling with MaBoSS and PhysiCell Studio is also great and intuitive!

Some word clouds based on publications by @vincent-noel.fr. Popular topics: cell, models, signaling.

Our #PhysiBoSS tutorial is now available at Briefings in Bioinformatics: academic.oup.com/bib/article/.... Learn how to build #multiscale models with #Boolean intracellular signaling, without any code, using #PhysiCell Studio! Showing three simple examples, and an update of Ruscone's invasion model👇

Congratulations to Cicely Macnamara, Robyn Shuttleworth, @vincent-noel.bsky.social, and Marco Ruscone for publishing PhysiMeSS in @gigabytejournal.bsky.social! A beautiful community contribution to the @physicell.bsky.social ecosystem! Tremendous work!! 🧪 gigabytejournal.com/articles/136

PhysiMeSS - a new physiCell addon for extracellular matrix modelling

PhysiMeSS - a new physiCell addon for extracellular matrix modelling

gigabytejournal.com

PhysiCell 1.14.0 is released! Key features include improved cell behavior grammar (including better phagocytosis, effector attack, and cell damage), better initialization, and more! 🧪 Release notes and downloads: github.com/MathCancer/P...

Release Version 1.14.0 · MathCancer/PhysiCell

PhysiCell: an Open Source Physics-Based Cell Simulator for 3-D Multicellular Systems Versions: 1.14.0 - Release dates: 15 September 2024 - 1.14.0 : 15 September 2024 Overview: PhysiCell is a flex...

github.com

PhysiCell is now on BlueSky! 🧪 bsky.app/profile/phys...

Our #PhysiBoSS tutorial is finally available as a preprint: arxiv.org/abs/2406.18371! Learn how to build #multiscale models with #Boolean intracellular signaling, without any code, using #PhysiCell Studio. Showing 3 simple examples, and an update of @MRuscone invasion model 👇

Read our essay in Nat Cell Bio: "Bringing computation to biology by bridging the last mile" We argue to shift resources/rewards towards creating user-friendly software to bridge computation and biology - it yields huge returns! @shantanuxsingh.bsky.social Free author link: rdcu.be/dv82F

Open #PhD position in the team! Modelling organoid digital twins to study muscle genetic diseases. With @eremy3 and in @centuri_ls interdisciplinary framework! centuri-livingsystems.org/phd2024-15/

Final days for applying to the #systembiology course organised by @hallben.bsky.social and Anna Niarakis ! I'll be teaching #MaBoSS stuff there. Don't miss it !

Ben Hall@hallben.bsky.social · 3y ago

Applications are now open for our advanced course in #systemsbiology! We will cover developing logical and executable models for understanding human disease. keynotes by Henning Hermjakob, Julio Saez Rodriguez, and Jasmin Fisher! coursesandconferences.wellcomeconnectingscience.org/event/comput...