Krzysztof T Jurdzinski
@ktjurdzinski.eurosky.social
PhD student at Anders Andersson's lab at KTH/SciLifeLab, Stockholm. Microbial ecologist, evolutionary biologist, bioinformatician. https://ktjmicrobes.com/
New preprint: We studied the population dynamics of Arctic #phytoplankton and #mycoplankton and found evidence for chytrid-mediated diatom bloom termination. www.biorxiv.org/content/10.6... Congrats @paulinethome.bsky.social #protists #protistsonsky #algae #diatoms #chytrids
Salinity-driven adaptations and evolution of DNA viruses in estuarine-coastal ecosystems journals.asm.org/doi/10.1128/... #jcampubs 🌊
Move to Eurosky today - hosted in Europe, governed by European law, open to everyone Use Bluesky as normal: your data & your connections all stay the same. Our commitment: we will never sell your content, your data, or profile you for advertising. move.eurosky.tech
EU-HAUL - Start Account Migration
move.eurosky.tech
Why choose a commercial entity that just went closed-source when a non-commercial one that builds in the open exists? (namely @eurosky.social) Didn't you just (exactly 2 weeks ago) reaffirm your support to open source “for Europe’s technological sovereignty”?
One is non-profit, the other for-profit, too. EU picked for-profit over non-profit social good, that was recommended to them by the JRC report I just shared.
Moved my @bsky.app account over to @eurosky.social using the service move.eurosky.tech - everything stays the same (followers/posts/etc) just now my data is stored in the EU & not the USA! Super easy to do and with better protections! I am slowly moving all my services away from US-based providers.
EU-HAUL - Start Account Migration
move.eurosky.tech
one anecdote: I was searching for a link to one of my old papers on Google, and the automated Gemini summary attributed all of my lab's work to my husband
Mel Andrews@bayesianboy.bsky.social · 2mo agoWhen utilized in literature review, LLMs consistently 1. fail to mention female authors in female-led literatures, 2. insist that men are more influential or more heavily cited when this is contradicted by objective citation counts, and 3. attribute women’s work to hallucinated male scholars.
🌊 After the 2022 Oder environmental disaster: Research-based recommendations for #policymakers and #authorities handed over to Federal Environment Minister Carsten Schneider. Full details + research findings from the ODER~SO project: www.igb-berlin.de/en/news/afte... #Odra #River #Research #Science
After the Oder environmental disaster: recommendations for action presented to politicis and authorities
igb-berlin.de
Our study on how and what we can predict using plankton metabarcoding data now out in @commsearth.nature.com! It was great to work on it together with @doubleanders.bsky.social, @emma-bell.bsky.social, @garefelt.bsky.social et al. www.nature.com/articles/s43...
The marine microbiome can accurately predict its chemical and biological environment - Communications Earth & Environment
Microbial DNA profiles from seawater can act as biosensors of environmental conditions and ecosystem status, demonstrating the potential of metabarcoding and machine learning in marine monitoring and ...
nature.com
Forgot the handle, #MicroSky
Krzysztof T Jurdzinski@ktjurdzinski.eurosky.social · 2mo agoOur study on how and what we can predict using plankton metabarcoding data now out in @commsearth.nature.com! It was great to work on it together with @doubleanders.bsky.social, @emma-bell.bsky.social, @garefelt.bsky.social et al. www.nature.com/articles/s43...
Our study on how and what we can predict using plankton metabarcoding data now out in @commsearth.nature.com! It was great to work on it together with @doubleanders.bsky.social, @emma-bell.bsky.social, @garefelt.bsky.social et al. www.nature.com/articles/s43...
The marine microbiome can accurately predict its chemical and biological environment - Communications Earth & Environment
Microbial DNA profiles from seawater can act as biosensors of environmental conditions and ecosystem status, demonstrating the potential of metabarcoding and machine learning in marine monitoring and ...
nature.com
A thing loosely related to my research but with high personal significance, since I grew up next to the Odra (ger. Oder) river. Though these are recommendations for policy makers in a specific case, it is an interesting read on challenges facing European rivers. www.igb-berlin.de/en/news/afte...
After the Oder environmental disaster: recommendations for action presented to politicis and authorities
igb-berlin.de
An awesome opportunity to work on multipartite ecology of phages in an unusually welcoming and intellectually stimulating environment.
Maliheh Mehrshad@mehrshmali.bsky.social · 2mo ago🔬 We have an open PhD position at SLU Uppsala! We're looking for a curious & driven PhD student to join the #ECOPHARM project funded by @kawresearch.bsky.social and investigate plasmid-dependent phages in aquatic ecosystems. Pls share with anyone who might be interested! www.slu.se/en/about-slu...
New #ISEPpapers by @deemteam.bsky.social! Reversal to osmotrophy in eukaryotes www.nature.com/articles/s41... "Distant eukaryotic lineages convergently reverted from predation to osmotrophy through co-option of bacterial genes and their mobilization via eukaryote-to-eukaryote HGT" #Protists
🌎 🧬 🖥️ logan-search.org the tool to query all SRA sequences (Dec 2023 snapshot) — just got major updates. Here's what's new. 🧵 1/12
A recent work led by collaborators, on comparing metabarcoding and light microscopy for pelagic monitoring in the Baltic Sea. Proud to be a part of it. #MicroSky doi.org/10.1038/s415...
Comparing DNA metabarcoding with light microscopy to identify eukaryotic phytoplankton in the Baltic Sea, Kattegat and Skagerrak - Scientific Reports
Scientific Reports - Comparing DNA metabarcoding with light microscopy to identify eukaryotic phytoplankton in the Baltic Sea, Kattegat and Skagerrak
doi.org
Beyond thrilled that our paper ‘Co-migration of hundreds of microbial species over metres drives selection and promotes non-motile hitchhikers’ has been accepted in Nature Communications! 🎉🦠 (1/n) www.nature.com/articles/s41...
Co-migration of hundreds of microbial species over metres drives selection and promotes non-motile hitchhikers - Nature Communications
Migration of microbial communities is poorly understood. Here, the authors use a meso-tube assay to show that hundreds of microbial species co-migrate over metre scales via chemotaxis, which restructu...
nature.com
Revised 16S rRNA V4 hypervariable region targeting primers enhance detection of Patescibacteria and other lineages across diverse environments academic.oup.com/ismecommun/a... #jcampubs
New work out! #Coevolution and synchronized evolutionary rates in #aphid dual #endosymbiot sytems w/ Jess, Emmanuelle, Armelle, & co. doi.org/10.64898/202... @cbgpmontpellier.bsky.social @inrae-france.bsky.social @cemess.bsky.social @dome-vienna.bsky.social @univie.ac.at #SymbioSky #MicroSky
More details to follow later, but this has been in the works for almost 6 years, so it is great to finally see it in preprint form: "The elusive resistome: a global comparison reveals large discrepancies among detection pipelines" www.biorxiv.org/content/10.6...
biorxiv.org
Very excited to present our new project #BYGENEX, an @ERC_Research Advanced Grant! During the next five years we will be studying the genetic mechanisms that govern the phagocytosis of bacteria by protists @icmcsic.bsky.social
Do biofilms give an ecological advantage? Yes! A fantastic follow-up to our previous biofilm work in ammonia-oxidizing archaea: "Biofilm Lifestyle Drives Ecophysiological Niche Expansion in an Archaeal Soil Nitrifier" www.biorxiv.org/content/10.6... Congratulations to all authors! #archaea
We’re hiring! 🇸🇪🔬 Tenure-track Assistant Professor in Prokaryotic Microbiology (molecular focus) at Stockholm University. Supportive environment + strong molecular research 👉https://su.varbi.com/en/what:job/jobID:921526/type:job/where:125/apply:1 Please share!!
Biträdande lektor i prokaryot mikrobiologi med inriktning mot molekylära processer
Institutionen för molekylär biovetenskap, Wenner-Grens institut (MBW) bedriver experimentell grundforskning inom molekylär cellbiologi, integrativ biologi och infektions- och immunbiologi. Forsknin
su.varbi.com
Really happy and excited to share our new paper on how plants perceive bacterial quorum sensing signals and activate a multilayered immune response 🌱🦠 Link here: www.pnas.org/doi/10.1073/...
Please help spread the word about this 3-year postdoc position in my team. If your expertise & interest lie in studying how organisms from different domains of life (Bacteria and Archaea) communicate, come join us this summer in cozy Odense, Denmark. Job post: www.nature.com/naturecareer...
Carbon, nitrogen, and sulfur cycling unveil deep-sea microbial niches in the Atacama Trench www.nature.com/articles/s41... #jcampubs 🌊
Carbon, nitrogen, and sulfur cycling unveil deep-sea microbial niches in the Atacama Trench - Nature Communications
Deep sea sediment microbes recycle key elements such as nitrogen, carbon, and sulphur. Gene activity from Chilean sediments shows communities are fuelled by sinking organic matter and by a sulphur ric...
nature.com
Really excited to share our new paper from @ibe-warszawa.bsky.social protist team! 🎉 We dive into protist symbioses and show how these interactions shape ecosystems and have played a key role in the evolution of eukaryotes 🦠
ISEP@isepprotists.bsky.social · 4mo agoNew #ISEPpapers by @ankarn.bsky.social et al.! Living together: evolutionary and ecological dimensions of #protist endosymbiosis academic.oup.com/microlife/ar... #Protists #Microbes #Symbiosis #Evolution
Bridging the membrane lipid divide: bacteria of the FCB group superphylum have the potential to synthesize archaeal ether lipids pmc.ncbi.nlm.nih.gov/articles/PMC...
