Thanks to generous funding from @bioimagingna.bsky.social, We were able to offer nearly half of our #BoBiAC2026 students fee waivers so that they could attend the course! The students also got to hear more about BINA programming & resources during a guest presentation from BINA 🔬

Few days left to apply!!!👇#BoBiAC

Eva de la Serna@sciencedoodles.bsky.social · 4mo ago

2 wks left to apply to join #BoBiAC2026! This course will teach you how to use Python to segment fluorescence images w/tools like @ilastik-team.bsky.social & CellposeSAM, & even how to measure cell features, neighborhood relationships, & colocalization. No coding experience needed! bobiac.github.io

The Cimini lab is hiring for both postdocs and interns! The postdoc role will cover bioimage analysis projects and educational material creation; the intern will be working on our Bilayers project for helping distribute and access deep learning tools for bioimage analysis. Click below to learn more!

Postdoctoral Associate and Data Science Intern roles - Broad Institute, Cambridge MA USA

The Broad Institute Imaging Platform (the team behind CellProfiler, Piximi, and Bilayers) is currently hiring for postdoctoral and intern roles! Postdoc role: we are looking for 1-2 candidates who ha...

forum.image.sc

Last week to apply! 👇🏻👇🏻👇🏻 (Closes Friday)

Damian Dalle Nogare@damiandn.bsky.social · 5mo ago

🚨🚨🚨JOB ALERT🚨🚨🚨 The Image Analysis Unit at Human Technopole in Milan is recruiting for two positions to join our growing team: 1) Bioimage Analyst 2) Research Software Engineer (RSE) Read on to learn why one of these two people should be you!

Want to apply to #BoBiAC2026 but need funding to attend? Thanks to support from @bioimagingna.bsky.social, we can provide a number of course fee waivers to accepted academic applicants who request one by completing the relevant section of the application form. More info: bobiac.github.io

2 wks left to apply to join #BoBiAC2026! This course will teach you how to use Python to segment fluorescence images w/tools like @ilastik-team.bsky.social & CellposeSAM, & even how to measure cell features, neighborhood relationships, & colocalization. No coding experience needed! bobiac.github.io

My first corresponding author 🔬🎸🦾 rupress.org/jcb/article/... Ever wonder what the ultrastructure of dopaminergic neuron presynaptic sites looks like? Using cryo-CLEM/ET we observed the wild changes that happen at these sites when the neurons fire or are more quiet. In the latest @jcb.org

Ultrastructure of dopaminergic varicosities revealed by cryo-correlative light and electron microscopy

Lycas et al. develop a cryo-CLEM workflow to characterize the ultrastructure of dopaminergic varicosities. They resolve in situ structures of TRiC/CCT and

rupress.org

We tried other brands but nothing works quite like a Guinness for our light sheet microscope. Future collab?

Today Hunter Elliott is lecturing on image processing. Key take-home before lunch: There is no free lunch:)

We've spent the last year building something at @humantechnopole.bsky.social that we think is genuinely needed: #AI that works across biological scales and data modalities, not just within them. A thread on what we're doing, why, and who we're looking for. A 🧵... 1/9

We opened 4 PhD positions at @humantechnopole.bsky.social together with Polimi (see 👇). My lab offers a PhD project on "Computational Morphogenesis": use state-of-the-art machine learning methods together with realistic simulations to build digital twins of developing tissue. Apply by March 26.

Human Technopole@humantechnopole.bsky.social · 6mo ago

🎓 How can #AI and #datascience unlock new insights into human health? 📊 We’re offering 4 #PhD positions through Polimi’s DADS Programme in the groups of Emanuele Di Angelantonio, Francesca Ieva, @janfunkey.bsky.social and Fernanda Pinheiro. Apply by 26 March 👉 humantechnopole.it/en/news/4-ph...

PAPER OUT ✨ How can we make smart microscopy more interoperable? What are the technical and cultural challenges? 30+ people from academia and industry propose a roadmap: doi.org/10.1515/mim-... Also a review of applications and repo of implementations. Join the discussion! smartmicroscopy.github.io

eurobioimaging.bsky.social@eurobioimaging.bsky.social · 6mo ago

🚨Publication! New review on #SmartMicroscopy: current implementations and a roadmap for interoperability by @lhinderling.bsky.social & colleagues from #EuroBioImaging's #SmartMicroscopy Working Group! 🔗 www.eurobioimaging.eu/news/new-pub... 📸 Hinderling et al, 2026, (DOI: 10.1515/mim-2025-0029)

Apply to join #BoBiAC2026 this summer! You'll learn how to use Python to segment fluorescence images w/tools like @ilastik-team.bsky.social & CellposeSAM, & even learn how to measure cell features, neighborhood relationships, & colocalization. No coding experience needed! More info: bobiac.github.io

Apply to join us this July for a crash course on Python & bioimage analysis tailored specifically for beginners! Applications due May 18th 🔬💻 #BoBiAC2026 bobiac.github.io

Federico Gasparoli@fedegasparoli.bsky.social · 7mo ago

📣 We are accepting applications for the 2026 Boston Bioimage Analysis Course (BoBiAC): bobiac.github.io! Join us this July at Harvard Medical School for a 6-day intensive hands-on course to learn bioimage analysis with Python! Apply by May 18th! No prior Python experience required! 🧫->🔬->💻->📊

Rewrote my Python bioformats wrapper (from aicsimageio/bioio) as a standalone package: - fully bootstrapped Java setup (just pip install) - lazy, repeatably-indexable Array object - fully spec-compliant OME-Zarr group obj. - xarray/dask exports github.com/imaging-form... v0.0.rc1 on PyPI

GitHub - imaging-formats/bffile: Modern Bio-Formats wrapper with clean lazy Python API

Modern Bio-Formats wrapper with clean lazy Python API - imaging-formats/bffile

github.com

📣 We are accepting applications for the 2026 Boston Bioimage Analysis Course (BoBiAC): bobiac.github.io! Join us this July at Harvard Medical School for a 6-day intensive hands-on course to learn bioimage analysis with Python! Apply by May 18th! No prior Python experience required! 🧫->🔬->💻->📊

Applications for QI 2026 are due on Friday! 🔬 🖥️ 📊 😺

Jennifer Waters@jencwaters.bsky.social · 7mo ago

Join us at CSHL for Quantitative Imaging: From Acquisition to Analysis—two weeks of advanced imaging, analysis, and hands-on labs with cutting-edge microscopes and open source software! 📅 April 6–21, 2026 📝 Applications due Friday Jan 30, 2026

Don't let the price of QI deter you! QI offers financial aid through NCI, HHMS, and @bioimagingna.bsky.social. Include a brief statement of need with your application. Aid is distributed by CSHL (not the course instructors). Many of our students - sometimes all! - receive significant support.

🔬 🖥️ 📊!

Jennifer Waters@jencwaters.bsky.social · 7mo ago

QI Class of 2025! Centroid = @sciencedoodles.bsky.social & @florianjug.bsky.social / first minima = @talley.codes & me. Applications for 2026 due on Friday! meetings.cshl.edu/courses.aspx...

QI Class of 2025! Centroid = @sciencedoodles.bsky.social & @florianjug.bsky.social / first minima = @talley.codes & me. Applications for 2026 due on Friday! meetings.cshl.edu/courses.aspx...

Join us at CSHL for Quantitative Imaging: From Acquisition to Analysis—two weeks of advanced imaging, analysis, and hands-on labs with cutting-edge microscopes and open source software! 📅 April 6–21, 2026 📝 Applications due Friday Jan 30, 2026

🚨 Only a few days left to apply for maybe the best microscopy course there is!!! 🚨 👇👇👇👇👇👇👇👇👇👇👇

Jennifer Waters@jencwaters.bsky.social · 8mo ago

PIs & Group Leaders, do your trainees need to learn light microscopy and image analysis? Send them to us! Financial aid is available! Applications due Friday 1/30. meetings.cshl.edu/courses.aspx...

Re-upping: if you want to learn microscopy and image analysis - REALLY learn them, in an intense and hands on way - this is a really great place to do it. Applications close Jan 30 meetings.cshl.edu/courses.aspx...

Quantitative Imaging: From Acquisition to Analysis

Cold Spring Harbor Laboratory Meetings & Courses -- a private, non-profit institution with research programs in cancer, neuroscience, plant biology, genomics, bioinformatics.

meetings.cshl.edu

🔬🚨New preprint alert! 🚨🔬 We developed quantitative expansion microscopy (qExM) - a method to accurately count proteins in situ by combining expansion microscopy's improved labeling with statistical estimators borrowed from ecology www.biorxiv.org/content/10.6... #SuperResolution #CellBiology

Want to up your microscopy and image analysis game? Applications open now for QI 2026! Join us in cold spring harbor for two weeks of intensive training in all things microscopy.

Jennifer Waters@jencwaters.bsky.social · 8mo ago

🔬 🖥️ Applications are open for the CSHL course Quantitative Imaging: From Acquisition to Analysis (April 6–21, 2026)! An intensive, hands-on course covering advanced fluorescence microscopy and quantitative image analysis using open-source tools. 🗓️ Apply online by Jan 30, 2026

🔬 🖥️ Applications are open for the CSHL course Quantitative Imaging: From Acquisition to Analysis (April 6–21, 2026)! An intensive, hands-on course covering advanced fluorescence microscopy and quantitative image analysis using open-source tools. 🗓️ Apply online by Jan 30, 2026

Quantitative Imaging: From Acquisition to Analysis

Cold Spring Harbor Laboratory Meetings & Courses -- a private, non-profit institution with research programs in cancer, neuroscience, plant biology, genomics, bioinformatics.

meetings.cshl.edu

Just 4 days until the start of I2K and its 33 totally free image analysis tutorials and events! Please share with your "home networks", especially early career researchers - the videos will be amazing and high-impact no matter how many people attend live, BUT (1/x)

🔬🧠 Our paper on smart microscopy & the issue of interoperability! www.biorxiv.org/content/10.1... LONG THREAD WARNING: Smart microscopy uses real-time image analysis to automatically guide the acquisition or perturbation of the sample (closed feedback-control loop). Many applications exist:

Check out our amazing #bobiac2025 cohort! Was a joy to teach this group! Thanks @bioimagingna.bsky.social for generously supporting this 6 week bioimage analysis w/Python course!

Day 1 of #bobiac2025 🐍 The day started strong with @talley.codes speaking about the Python ecosystem and uv. Students then gave short talks about their research (#coolscience). It was then time to code in Python with @sciencedoodles.bsky.social!