Jonathan Taylor

@jtimaging.bsky.social

Optical physicist tackling biomedical imaging and measurement problems with realtime computation, maths and computational imaging

Sadly, applications to the Advanced Python summer school have dropped significantly over the past 2 years. Plus, there'll be no external funding for the 1st time in *17 years*. Likely all because of GenAI - but programming skills still matter🔥 Deadline May 3, please help by sharing: aspp.school

Good to see this confirmation about the lumenal macrophages that show up in fli1:gfp zebrafish! We see them zipping around the heart in our beating-heart timelapses like this one (credit: Daniel Olesker). They make it harder to see cell division events - how many divisions can you spot here?

Stefan Oehlers@oehlerslab.org · 5mo ago

Really cool #zebrafish paper 🧪 from Bart Weijts & Catherine Robin (Hubrecht): starts with the basic question of are those superbright kdrl/fli1a positive cells (that we've all seen in the vascular Tg lines) something special? Yes! They're lumenal macrophages www.nature.com/articles/s41...

Myself and @immunoah.bsky.social are looking to hire a postdoctoral scientist to build a next-generation high-throughput high-resolution light sheet microscope for imaging entire cleared organs/tissues and to further develop live & fixed tissue clearing methods. www.nature.com/naturecareer...

MRC Laboratory of Molecular Biology@mrclmb.ac.uk · 6mo ago

Interested in instrument development & optical microscopy? Join @immunoah.bsky.social & @jamesdmanton.bsky.social developing high-throughput light sheet microscopy to image entire tissues & progressing tissue clearing methods www.nature.com/naturecareer... Closes 07 APR #PostdocJobs #neuroimmunology

Microscopy image taken by a light sheet microscope showing an optically cleared lung in blue.

Watch out for the "conference accommodation" scam emails that have been going around for a while. I was rather disconcerted to get one for the upcoming microscopy conference in Sweden that I *am* attending, but am not speaking at (so not even listed anywhere). How on earth could the spammers know…?

Yesterday I learned that MS Teams throttles screen-sharing to ~3fps. To override that, you have to know to press an obscure and inscrutably-labelled button, every time. I very nearly gave a crucial online presentation, full of beating hearts, at 3fps without even realising. Stuff of nightmares.

@retof.bsky.social, I sometimes think of your wish, some time ago, for everyone to have their own hype-man on stage when they are giving a conference presentation. My Teams meeting transcript from today seems to have completely hallucinated a colleague interjecting "ok. yeah! play the song! okay"

We have two funded postdoctoral positions available. Topics encompass: -Next gen light-sheet fluorescence microscopy instrumentation -Structured illumination microscopy and other approaches to extend the resolution limit. -Nonlinear microscopy combined with adaptive optics / phase conjugation

Here’s one for the Bayesians: if you are pulled from an avalanche in cardiac arrest after >60 minutes, your chances of survival are higher than if you are pulled from an avalanche in cardiac arrest after <60 minutes 🤯

A great opportunity to come to Glasgow for an interdisciplinary PhD, benefitting from enhanced support and stipend, and a diverse cohort of students alongside you for an inclusive, team experience for your PhD! Please share widely, and spread the word with your undergraduate students.

DiveIn CDT@diveincdt.bsky.social · 10mo ago

📣 Applications Now Open! 🌊 Dive into mission-driven interdisciplinary #STEM research with a fully funded 4-year PhD starting Sept 2026 ✅ Co-create your project ✅ Enhanced stipend ✅ Cohort-based experience ✅Partner network 📅 Applicant Webinar: Nov 26 👉More info & registration: www.divein.org.uk/apply

Promotional graphic for DiveIn CDT PhD recruitment. The left side shows individuals working with technical equipment in a lab setting. The right side contains text: “Applications Now Open – Fully-funded 4 year PhD. Applicant Webinar – 26th November. More info at divein.org.uk.” Logos for University of Glasgow, UKRI Engineering and Physical Sciences Research Council, and DiveIn CDT appear at the bottom.

Big grant submitted, it's always a good sign when I'm *still* excited about the science even when the grind of the application is over 😀. I sketched this graph on my office whiteboard to explain to people the stress of when the trajectory feels like we won't get to the finish line in time!

Graph showing variable progress towards completion, not always on trajectory to reach the finish line before the deadline date

This looks great for learning and improving your research git workflows, "Rather than simply teaching commands, the sessions explore the workflows that make them meaningful". Can connect to the talk online, so no excuses not to join!

Software Sustainability Institute@softwaresaved.bsky.social · 11mo ago

🎓 We are pleased to share details of an upcoming hybrid series of short talks featuring #SSIFellow Hui Ling Wong, focusing on practical, research-oriented approaches to using Git. This series of 15-minute talks will run every Tue from 14 Oct to 11 Nov. www.software.ac.uk/news/upcomin...

Does anyone have any experience with building a DIY upconversion/SHG setup to get pulsed blue out of a Ti:Sapph laser (Chameleon)? It seems like it should be fairly straightforward, but I would value any tips people have, or numbers for efficiency level you achieved. Thanks in advance!

A thoughtful account of why version control is essential for research software: "achieving the highest levels of insight and impact requires robust tooling and reproducibility baked into its core"; "...requires code that can handle significant complexity and can evolve" [1/3]

Software Sustainability Institute@softwaresaved.bsky.social · last yr.

➡️ In our latest blog post #SSIFellow Hui Ling Wong delves deeper into how version control helps to make research more reproducible as discussed in a recent event at @imperialcollegeldn.bsky.social. Read more at www.software.ac.uk/blog/keeping...

I'm delighted to share the news that I've been promoted to (full) Professor. Feeling very thankful for all those who have mentored and supported me over the years, the smart and enthusiastic team I get to work with on cool science, and the colleagues who make Glasgow a great place to work.

Some wise words on the use of GenAI in scientific activity. "...that is a tacit admission that the work is not worth being done by the scientist. [...] we’ve yielded the opportunity to think about science, discuss our practice, expand our understanding, spark new ideas and develop as researchers."

Carl T. Bergstrom@carlbergstrom.com · last yr.

A few months ago, Nature published how-to guide for using ChatGPT to write your peer reviews in 30 minutes. This is, of course, a horrible idea. Here’s my response with @jbakcoleman.bsky.social .