🚀Join Helsinki BioImaging as an Image Analysis Specialist🖥️to support cross-disciplinary image analysis projects. If you love coding and are interested in working at the crossroads of computer science and biology, apply by 🗓️ November 15, 2025⤵️ jobs.helsinki.fi/job/Helsinki... #jobopening

Image Analysis Specialist/Engineer/Coordinator, Helsinki Bioimaging

Image Analysis Specialist/Engineer/Coordinator, Helsinki Bioimaging

jobs.helsinki.fi

- A postdoc to work on cancer extravasation (4-year project). - A postdoc help in completing Filopodia-related lab projects (2-year). - Multiple Marie Curie postdoc positions that will open in the fall. - We will open a 5-year position to cover my teaching (70% research and 30% teaching).

Guillaume Jacquemet@guijacquemet.bsky.social · last yr.

Are you looking for a postdoc? I will be looking for 2-4 people after the summer to join the lab !! Do not hesitate to reach out and disseminate !!

Are you looking for a postdoc? I will be looking for 2-4 people after the summer to join the lab !! Do not hesitate to reach out and disseminate !!

Walking through streets of Helsinki. After-conference social events are the best way to finish the day. Sunny Helsinki summer night, good weather, good company, what else can one ask for? @florianjug.bsky.social @jwpylvanainen.bsky.social @turkubioimaging.bsky.social @ai4life.bsky.social

4th day on the go for #neubiaspasteur2025 with a @biapyx.bsky.social practical course by @jwpylvanainen.bsky.social and a #cellpose #dask and RNA2Seg (doi.org/10.1101/2025...) course with @gaellel.bsky.social and Alice Blondel

Perfect way to finish the day with ☀️ and warm evening. Thanks to the teachers and dear colleagues @jwpylvanainen.bsky.social @mambroset.bsky.social @gaellel.bsky.social @m-albert.bsky.social Carlos Garcia-Lopez & Heloise Monnet, and the students that join us !

Second day with Ilastik (@ilastik-team.bsky.social) covered by @MinhSonPhan, with @strigaud.bsky.social and @jytinevez.bsky.social as helpers. How to easily train a pixel classifier to segment focal adhesions..

Kick-starting the #neubiaspasteur2025 #BioImageAnalysis courses at @pasteur.fr and @pasteuredu.bsky.social

Just arrived to Institute Pasteur in Paris for Neubias Image analysis course. Todays opening talk about the future of bioimage analysis by @florianjug.bsky.social - very cool week ahead! #neubiaspasteur2025

Introducing warpfield, an open source Python library for GPU-accelerated non-rigid 3D registration. Warps and aligns gigavoxel volumes within seconds (not hours). For 3D microscopy, region-to-region and cell-to-cell matching. A collaboration with @mh123.bsky.social 🚀 github.com/danionella/w...

Second round of hashtag#GloBIAS Free Help (previously Call4Help) is happening in May. You can register for the sessions on our webpage: www.globias.org/activities/g... Registration deadline is 7. May 2025.

If you train people in ImageJ, Fiji, whatever, even if it isn't your day job, please let us know, and please share this post! Thanks a ton, we really appreciate it. (2/2) forms.gle/C8dUpg8qZkbD... #bioimaging #microscopy #bioimageanalysis

Open Source Bioimage Analysis Training Survey

We are attempting for a publication to estimate the number of biologists who have attended a tutorial or training course in open source bioimage analysis (especially user friendly tools, but anything ...

forms.gle

Joanna Pylvänäinen @jwpylvanainen.bsky.social Hanna Grobe and Guillaume Jacquemet @guijacquemet.bsky.social present their practical guidelines for data exploration in quantitative cell biology. journals.biologists.com/jcs/article/... #OpenAccess

Delighted to announce that @erinweisbart.bsky.social and I have teamed up to create a new bioimage analysis video podcast called Ask Erin/Dear Beth - you can check it out at the link below! It will highlight common challenges in #bioimageanalysis, as well as our favorite solutions to them. (1/x)

Ask Erin, Dear Beth

On Ask Erin/Dear Beth, bioimage analysis experts Beth Cimini and Erin Weisbart, of the Imaging Platform at the Broad Institute of MIT and Harvard, answer your image analysis questions! Whether it’s ab...

youtube.com

We wrote an opinion with simple, practical advice for building data exploration workflows in quantitative cell biology with @guijacquemet.bsky.social and @hanna09.bsky.social . I hope you find it useful!

Guillaume Jacquemet@guijacquemet.bsky.social · last yr.

Here we share our opinions on "Practical considerations for data exploration in quantitative cell biology" journals.biologists.com/jcs/article/... Joanna, Hanna and I worked quite a bit on this piece and I hope you find it useful Many thanks to @jcellsci.bsky.social for publishing it

Repost appreciated: Open #PhDposition in structural virology in my group! Join us in Umeå, 🇸🇪 to uncover how arboviruses remodel the cellular interior. In situ #cryoET combined with #virology, #cellbiology, and #biophysics. Deadline 4 May. More info: www.carlsonlab.se/join/

Jamie Hyneman's lecture on creative problem solving & climate innovation was packed, so we found a cozy spot in the streaming room to watch live with @ivanhcenalmor. @aboakademi.bsky.social

In their Essay, @jwpylvanainen.bsky.social, @guijacquemet.bsky.social and @lankylaste.bsky.social outline their practical recommendation for developing image analysis software for life science applications. journals.biologists.com/jcs/article/...

Excellent set of guidelines for anyone developing software for life scientists, from @jwpylvanainen.bsky.social, @lankylaste.bsky.social and @guijacquemet.bsky.social journals.biologists.com/jcs/article/...

Practical recommendations for developing software for life science applications

ABSTRACT. Developing user-friendly image analysis software is essential for advancing biological and life science research. However, the interdisciplinary gap between software developers and life scie...

journals.biologists.com

Awesome to have @henriqueslab.bsky.social join us as a visiting professor!!!

InFLAMES Research Flagship@inflames-flagship.bsky.social · last yr.

We are happy and honored to have Dr. Anna Bigas and Professor Ricardo Henriques as our Visiting Professors. Welcome on board! #stemcells #cancer #ImagingTechnologies @utu.fi @turkubioscience.bsky.social @turkubioimaging.bsky.social @henriqueslab.bsky.social @hospitaldelmar.bsky.social

Check this one out! This is a great read (I am bias). But Joanna and Stefania did an amazing job putting the article together.

Joanna Pylvänäinen@jwpylvanainen.bsky.social · last yr.

Fresh from the press! @lankylaste.bsky.social, @guijacquemet.bsky.social and I put together a practical guide on how to develop software for life science applications.

And it’s out! Thanks to @bethcimini.bsky.social and all the participants in the @biologists.bsky.social “Effectively Communicating BioImage Analysis” workshop last year for the fruitful discussions that started the idea behind this paper. Get reading and let us know what you think!

Joanna Pylvänäinen@jwpylvanainen.bsky.social · last yr.

Fresh from the press! @lankylaste.bsky.social, @guijacquemet.bsky.social and I put together a practical guide on how to develop software for life science applications.

Fresh from the press! @lankylaste.bsky.social, @guijacquemet.bsky.social and I put together a practical guide on how to develop software for life science applications.

Practical recommendations for developing software for life science applications

ABSTRACT. Developing user-friendly image analysis software is essential for advancing biological and life science research. However, the interdisciplinary gap between software developers and life scie...

doi.org

Yet another throwback to my thesis work—digging into year-old data. For once, past me did future me a favor: everything nicely documented in one place! 💪🏻

To publish or not to publish? And where to publish? Hopefully @guijacquemet.bsky.social can answer some of these questions in his presentation today. @aboakademi.bsky.social

And with that the first ever @v4sdb.bsky.social Student Winter School came to the end. Thanks for all for coming, and you will be able to find all the course material on the website: danio-elte.github.io/2025V4SDBStu...

We just released and uploaded a new version of *Mastodon*, the large-scale tracking and track-editing framework for large, multi-view images. Mastodon is available via Fiji, via a dedicated update site. mastodon.readthedocs.io/en/latest/do... Below is a thread that survey some of the novelties ⏬️

2025 is now well underway and we are happy to announce that ZIDAS is coming to Basel this year ! 2025.zidas.org

ZIDAS 2025

This one-week school provides a hands-on introduction to image processing and analysis, with an emphasis on biologically relevant examples.

2025.zidas.org

Great talks and hands-on sessions at @v4sdb.bsky.social's Winter School 2025 in beautiful Budapest! 🤗 Yesterday, @jekely.biologists.social.ap.brid.gy and @jwpylvanainen.bsky.social guided us through CATMAID, TrackMate, and CellTracksColab. 🧫 More imaging data analysis and programming ahead! 🧑‍💻