Nextflow Training Week is Back on June 23-27, 2025! 🎉 This free, self-paced training is perfect for newcomers looking to get started with Nextflow Sign up now: hubs.la/Q03sDmpr0

To continue advancing the vision that scientific innovation runs on software, we are thrilled to announce that Seqera has closed it’s Series B funding, led by Addition, with participation from Speedinvest, Talis, Amino Collective, BoxOne, and SNR! Learn more: hubs.la/Q03lcmf20

Scaling the Future of Scientific Software: Seqera Raises $26M Series B

Today, we're ecstatic to announce that Seqera has raised $26 million in Series B funding, led by Addition with participation from Speedinvest, Talis, Amino Collective, BoxOne, and SNR. This milestone ...

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🎉Episode 50 of the @nextflow.io Podcast is here! Host @ewels.bsky.social sits down with @kbestak.bsky.social, a PhD student and active contributor to the @nf-co.re community, working at the cutting edge of #SpatialOmics and #microscopy. 🎧Catch it here: hubs.la/Q03fVPNx0

Imaging pipelines and analysis, with Krešimir Beštak | The Nextflow Podcast by Seqera

Seqera | The Home for Open Science | From the creators of Nextflow, Wave, and MultiQC

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I’m excited to share I will be speaking at #ABRF2025’s Annual Meeting in Las Vegas in March. This meeting brings together scientific leaders of biomolecular and bioinformatics core facilities to discuss how we can maximize the impact these valuable groups have within their institutions.

We've been working really hard on the new Nextflow training materials and they've turned out great. Take advantage of them on your own or by doing a watch party with a group next week during our Nextflow training week. 🚀

Nextflow@nextflow.io · 2y ago

🚀 Next week is #Nextflow #Training Week! We’ve got fresh new material ✨ including “Hello Nextflow”, premiering on the @nextflow.io YouTube channel 🎬 Got questions? The #Nextflow #Ambassadors are ready, standing-by on the Community Forum all week 💬 Sign up here: community.seqera.io/t/nextflow-t...

I'm doing a webinar next week about instrument-to-analysis automation of bioinformatics data processing!

Seqera@seqera.io · 2y ago

Just as robotics revolutionized wet lab experiments, automation is transforming bioinformatics. 💻 Join us next week as we demonstrate how to automate and scale event-driven bioinformatics workflows using @nextflow.io and Seqera. 🧵 👉 Register now: hubs.la/Q0375dwt0

Super excited for the distributed nf-core hackathon! We've got 36+ local sites being organized in over 20 countries! Registration is now open!

nf-core@nf-co.re · 2y ago

Calling all bioinformatics enthusiasts! Join a global network of @nextflow.io ninjas for the @nf-co.re hackathon from March 24-26, 2025 🎉 Collaborate remotely or at one of the 36+ local sites worldwide (🇦🇷🇦🇺🇧🇪🇧🇷🇨🇦🇨🇴🇨🇿🇩🇰🇪🇹🇫🇷🇩🇪🇬🇭🇬🇷🇮🇳🇮🇹🇳🇱🇳🇿🇵🇰🇵🇱🇿🇦🇪🇸🇸🇪🇨🇭🇹🇷🇬🇧🇺🇸). Registration is now open! 🎟 nf-co.re/events/2025/...

This is a call out to bioinformatics developers that we are working to get all of NF-Core pipelines (and by extension most of Bioconda) to support Arm. Spot price for c8g.16xlarge (Graviton4) and it is below 60¢/hr. Or < 1¢ per physical CPU if your application supports Arm ...

Attending #SLAS2025? Don't miss our exclusive Exhibitor Tutorial at 2:00 PM today in Room 24C! In this talk, we will discuss how @nextflow.io and Seqera are simplifying the analysis of large-scale sequencing and cell imaging data! 🔗 Can't attend? Get the recording instead: hubs.la/Q034lfYZ0

I'm attending SLAS! Come find me at our booth if you want to chat about anything Nextflow-related. I'll also be presenting a tutorial about setting up event-driven bioinformatics automation using Nextflow and Seqera Platform. I hope to see some of you there!

Seqera@seqera.io · 2y ago

Heading to SLAS2025 in San Diego? ✨ Stop by Seqera’s booth #2850 for live demos, expert chats, and a chance to win AirPods!

One of my favorite talks at the @nextflow.io summit was @kenibrewer.bsky.social's talk on how to NOT contribute to nf-core (using nf-core in your organization). He wrote a nice post on the @nf-co.re blog on building an nf-core style modules library for your organization seqera.io/blog/buildin...

Building an nf-core style modules library for your organization | Seqera

If you would like to bring nf-core’s approach to enabling code within your own organization, you can!

seqera.io

I wrote a blog article about some of the best parts of nf-core's modular tooling and how to use it within your own organization. This was an extension of a talk I gave at the Nextflow Summit late last year. Read or watch however you prefer! www.youtube.com/watch?v=Pn_B...

How to NOT contribute to nf-core: Best practices for using nf-core tooling in closed-source contexts

YouTube video by Nextflow

youtube.com

Seqera@seqera.io · 2y ago

✨ The @nf-co.re library (1400+ reusable modules, 100+ pipelines) makes bioinformatics workflows seamless and FAIR. Now, you can build a custom library for your organization! Learn how to modularize tools and future-proof your code 👇 hubs.la/Q031dvxx0 #Nextflow #nfcore

I didn't do any work directly on the OLE project during my time in the Breaker Lab, but I'm convinced that OLE is one of the most exciting bacterial #ncRNA to be discovered in recent years. Definitely check out this preprint if you'd like to see some really exciting RNA #cryoEM structures.

Ronald Breaker@ronbreaker.bsky.social · 2y ago

#ncRNA molecules are far stranger than you think. We propose that OLE RNA is bacteria's functional mimic of #mTOR, and the Das lab at Stanford proposes OLE RNA penetrates cell membranes! They also find that RNAs we called ROOL and GOLLD form 8-membered nanocages. www.biorxiv.org/content/10.1...

Our next hackathon is rapidly approaching! 🚀 - March 24-26, 2025 - Online / local distributed sites For the distributed sites, WE NEED YOU! 🎯 If you're able to book a meeting room and host a local site, fill in the local site registration form: nf-co.re/events/2025/...

Hackathon - March 2025 (Online / Distributed)

A virtual hackathon with local sites to develop nf-core together

nf-co.re

Know someone looking for a new start in 2025? 🔍 Colleagues of #BlueSci, help flex this new social muscle! 🦾

German BioImaging@gerbi-gmb.de · 2y ago

🚀 We're hiring! Join the German BioImaging Team as a Software Developer! 💻 Build scalable #bioimaging solutions 🌍 Collaborate globally 🎯 Contribute to open science through #OMEZarr @openmicroscopy.org Remote, full-time. Apply by 31 Jan 2025: bit.ly/3Zrd4SR

Exciting news! 🎉You can now try Chai-1, the SOTA model for biomolecular structure prediction by Chai Discovery, with Seqera! 👉 Check it out: github.com/seqeralabs/n...

GitHub - seqeralabs/nf-chai: POC Nextflow pipeline to run the Chai-1, SOTA model for biomolecular structure prediction

POC Nextflow pipeline to run the Chai-1, SOTA model for biomolecular structure prediction - seqeralabs/nf-chai

github.com

We’re thrilled to share our Nature Methods review on #CellPainting — your go-to resource for mastering Cell Painting! From MOA and toxicity prediction to contributing to candidate drugs in clinical trials, we’ve distilled 10 years of insights!

Cell Painting: a decade of discovery and innovation in cellular imaging - Nature Methods

This Review synthesizes the literature from over 10 years of Cell Painting for image-based profiling and highlights how advances in this technology enable new biological discovery of cellular phenotyp...

nature.com

📍Pinned Post: Welcome to the papers with code feed! bsky.app/profile/did:... Papers from PubMed, bioRxiv, Bature, PLoS, etc, with links to GitHub will be included here. Anyone can post to this feed. See also: blog.stephenturner.us

Really exciting seeing the results from this incredible effort come out!

Anne Carpenter@drannecarpenter.bsky.social · 2y ago

Now on biorxiv! The JUMP-Cell Painting Consortium’s paper: “Morphological map of under- and over-expression of genes in human cells” This is the genetic perturbation portion of the JUMP’s dataset; our chemical perturbation paper will come in a few months www.biorxiv.org/content/10.1...

Are you looking for job opportunities where your #Nextflow skills are valued? Check the list we've compiled below. 👇 #Jobs #Opportunities

This is really cool, definitely worth a look for anyone running in environments where container security is of concern (which should be.. everywhere, right?) 📦🔒✨ The magic here for me is being able to automatically halt pipeline runs if new container CVEs are released. Totally hands off but safe.

Seqera@seqera.io · 2y ago

Enhancing security in data pipelines with @nextflow.io and Wave! 👉 Read now: hubs.la/Q02ZxVW90

Really exciting to see @valenceai.bsky.social open-sourcing a large, curated, FAIR resource for #QuantumMechanics datasets. Pre-computing missing values needed to train #ML models is also fantastic from a #GreenAlgorithms perspective. #OpenScience

Valence Labs@valenceai.bsky.social · 2y ago

We curated 40+ quantum mechanics datasets, covering 250+ quantum methods & 1.5B geometries. All of this is easily accessible through the OpenQDC library. 🧵 Harness the power of QM data with a single line of code: www.openqdc.io Read the blog: www.valencelabs.com/blog-posts/o...

I'm really sad to see Spring Science winding down. Having worked closely with them in a previous role during a software evaluation, I was incredibly impressed by the quality of their tooling and the caliber of their team. https://x.com/kamens/status/1858585137690407038

Ben Kamens on LinkedIn: Spring Science | 24 comments

Spring’s AI tools are loved by scientists. But we do not make enough money to continue running the company. Our tech gives ground-breaking new superpowers to… | 24 comments on LinkedIn

buff.ly

Love seeing the new @seqera.io AI starting to be used for real-world uses, after we've been testing it with toy examples for so long.. 🧪 Great little blog post by Lorena! 🎉 lpantano.github.io/post/2024/ne...

Showcase: My Quick Dive into Pipeline Automation with Seqera AI | My bits

Example of automation with miniaml investment but good results

lpantano.github.io

If you already have the Nextflow VSCode extension installed be sure to update to the latest version because it is 🔥🔥🔥. The language server that the extension includes has other cool implications for the future of Nextflow tooling. Attend the webinar for details!

Seqera@seqera.io · 2y ago

💻Webinar: A new era for @nextflow.io! Join us on Dec 10 to explore the latest major version of the Nextflow VS Code extension, now powered by a new language server that elevates Nextflow into a first-class language in its own right! 👉 Register now: hubs.la/Q02Z0R0q0

If you missed the Nextflow Summit, this is a great way to catch up on major innovations coming to the Nextflow ecosystem. Seqera AI in particular is exceptional at writing proper DSL2 Nextflow code which has been a major frustration of mine with other code assistants. Highly recommend!

Seqera@seqera.io · 2y ago

📢 Webinar Today! There's still time to register for our What’s New Product Webinar happening today! Join our Product Managers to learn about exciting new product updates to @nextflow.io and Seqera! Register now: hubs.la/Q02YSJPz0

Are you looking for job opportunities where your #Nextflow skills are valued? Check the list we've compiled below. #Jobs #Opportunities

We believe in a future where science is open to all. Where community is the driving force of discovery. With no limits on knowledge, technology can take humanity to new frontiers. We are here to advance science for everyone through software. www.youtube.com/watch?v=uq5G...

Seqera, advancing science for everyone through software

YouTube video by Seqera

youtube.com

🚨We're recruiting! Interested in making science and computing more environmentally friendly? Now's the time! Very excited to build a research group at Cambridge Uni to expand our Green Algorithms work thanks to the support of the Wellcome Trust www.green-algorithms.org/join-us #AcademicSky #SciSky

Interested in joining us?

The Green Algorithms project promotes environmentally sustainable computational science through an online calculator, training material and other tools.

green-algorithms.org

New social ... who dis?