Led by @virusesimmunity.bsky.social and @krishnaswamylab.bsky.social, a team of Yale researchers developed a new tool #Immunostruct that combines multiple types of data to better support the development of personalized vaccines, including vaccines for #cancer. medicine.yale.edu/news-article...

Using Machine Learning to Develop Personalized Vaccines for Cancer

A new tool combines multiple types of data to better support the development of vaccines that target patient-specific pathology.

medicine.yale.edu

We're @neuripsconf.bsky.social HiPoNet: neurips.cc/virtual/2025... HELM: Hyperbolic LLM openreview.net/forum?id=Rnb... Talk: hyperboliclearning.github.io/events/neuri... (Unireps/Neureps) Measure Before You Look openreview.net/forum?id=5Yn... (FM4LS) CellSpliceNet: openreview.net/forum?id=gVA...

We have 3 papers at TAG-DS @NeurIPSConf! DYMAG: Message Passing Using Dynamical-systems-based Waveforms (Oral) openreview.net/forum?id=WYi... A Graph Laplacian Eigenvector Pretraining Method for GNNs (Spotlight) openreview.net/forum?id=r5c... Reeb Graphs and Towers openreview.net/forum?id=U8I...

(1/N) Thrilled to share that our paper HiPoNet (High dimensional Point cloud Network) to be presented at NeurIPS 2025! HiPoNet treats an entire high-dimensional point cloud as a datapoint! It captures multi-scale geometry and topology of the cloud perform classification and regression tasks.

Good morning from Vancouver! 🌞⛰️ We’re at #ICML2025 presenting at GenBio + MAS. Come chat with us about machine learning in biology! With @RobertXiangruTang, @ChenLiu, @DanqiLiao. Views like this make the science even sweeter.🧬🧠 #ML #ComputationalBiology #ICML #Vancouver

Defining and benchmarking open problems in single-cell analysis - @krishnaswamylab.bsky.social @fabiantheis.bsky.social bit.ly/4l8dsiF

Defining and benchmarking open problems in single-cell analysis - Nature Biotechnology

Nature Biotechnology - Defining and benchmarking open problems in single-cell analysis

bit.ly

Mark your calendars 🗓️ for June 23 for a Kavli Awards Research in Progress!🧠 Hear from Drs. Bhaskar (@krishnaswamylab.bsky.social‬), @lashaeneuroxp.bsky.social‬, Chen (@emonetlab.bsky.social)‬, Martinez-Magaña (@janitzamontalvo.bsky.social), @kuanawanda.bsky.social‬, Teefe, & ‪‪@haohy.bsky.social‬.

New preprint! Excited to share our latest work “Accelerated learning of a noninvasive human brain-computer interface via manifold geometry” ft. outstanding former undergraduate Chandra Fincke, @glajoie.bsky.social, @krishnaswamylab.bsky.social, and @wutsaiyale.bsky.social's Nick Turk-Browne 1/8

Accelerated learning of a noninvasive human brain-computer interface via manifold geometry

Brain-computer interfaces (BCIs) promise to restore and enhance a wide range of human capabilities. However, a barrier to the adoption of BCIs is how long it can take users to learn to control them. W...

doi.org

Excited to organize this! Should be an exciting event!!

Graph Signal Processing Workshop 2025@gsp-workshop.bsky.social · 2y ago

The 8th annual Graph Signal Processing Workshop is back this May 14-16! Held in Montreal, CA, at MILA! GSP covers all things graphs, signals, learning, & applications! 🔗: gspworkshop.org 👉🏻Abstract submission opens Feb 1 👉🏻 Registration opens Mar 20

Join us for an exciting session in @jointmath.bsky.social tomorrow! Here is our revised schedule!

We are at @jointmath.bsky.social Jan 8-11! 1/8: My talk at Topological Machine Learning I 1/8: Dhananjay Bhaskar at Contributed Paper session on Topology 1/11 join our special session on Mathematical and Computational Oncology Also check out @pseudomanifold.topology.rocks on 1/9!!

Merry Xmas!

Looking for talented postdocs in deep learning for neuroscience and neuromodulation with the Murat Gunel lab in neurosurgery (medicine.yale.edu/lab/gunel/)! Projects include brain signal decoding, dynamics modeling for neuromodulation ASD and other conditions. See: krishnaswamylab.org/join

Join the Krishnaswamy Lab

We work on developing foundational mathematical <span class=

krishnaswamylab.org

📢Out now! @krishnaswamylab.bsky.social presents a graph signal processing method that learns gene representations from single-cell data. www.nature.com/articles/s43... 🔓https://rdcu.be/d4kPz

Mapping the gene space at single-cell resolution with gene signal pattern analysis - Nature Computational Science

This work presents a graph signal processing method, gene signal pattern analysis, to embed gene signals from single-cell sequencing data. In diverse experimental set-ups and case studies, GSPA establ...

nature.com

(1/n) Excited to share our work on gene signal pattern analysis (GSPA)---our new method for analyzing gene expression over cellular manifolds! www.nature.com/articles/s43...

Mapping the gene space at single-cell resolution with gene signal pattern analysis - Nature Computational Science

This work presents a graph signal processing method, gene signal pattern analysis, to embed gene signals from single-cell sequencing data. In diverse experimental set-ups and case studies, GSPA establ...

nature.com

Last day to apply for our @wutsaiyale.bsky.social open rank faculty position in one of several relevant fields including computer science, data science, engineering in addition to psychology, neuroscience and cognitive science!! apply.interfolio.com/153378

🏆 Best Paper Award & Honorable Mention 🏆 Congratulations to our outstanding authors for their exceptional contributions to LoG 2024! 🎉 📜 Your work inspires the entire graph and geometric ML community!

Happy thanksgiving!!

Up Mont Royal in the rain! For those of you who don’t know I’m on a one-semester sabbatical to Montreal!

Pictures from @logconference.bsky.social meetup Montreal!

If you're in Montreal tomorrow, catch us at the @logconference.bsky.social meetup @Mila_Quebec ! sites.google.com/view/log-202...

LoG 2024 Montreal

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sites.google.com

✨EXCITING NEWS! We now have a Bluesky account!! AND registration for the 3rd Learning on Graphs conference is open 😊 It is virtual, free to attend, livestreamed, and recorded 📹 Sign up today! The conference is this coming week 😱 forms.gle/eYiDCopJGUc8...

Siddharth from our lab explaining protscape and scattering to CT Governor Ned Lamont and others at the AI summit hosted by @boehringer.bsky.social and BioCT arxiv.org/abs/2410.20317!!

(1/3) Our lab is at the New England Computer Vision Conference (NECV) right here in New Haven today! Chen Liu is presenting an oral on Imageflownet for longitudinal forecasting of medical images. arxiv.org/abs/2406.14794

ImageFlowNet: Forecasting Multiscale Image-Level Trajectories of Disease Progression with Irregularly-Sampled Longitudinal Medical Images

Advances in medical imaging technologies have enabled the collection of longitudinal images, which involve repeated scanning of the same patients over time, to monitor disease progression. However, pr...

arxiv.org

(1/n) Intro...We work on mathematical machine learning and deep learning methods that use dynamics modeling, signal processing, geometry and topology to accelerate scientific discovery from data. Our key focus is representation learning of complex unlabelled data, a host of downstream tasks:

Learning on graphs meetups this year!

After the success of manifold learning in ML, what geometric object do you like next? Algebraic varieties come to mind recently :

Learning algebraic varieties from samples - Revista Matemática Complutense

We seek to determine a real algebraic variety from a fixed finite subset of points. Existing methods are studied and new methods are developed. Our focus lies on aspects of topology and algebraic geom...

link.springer.com

Still new to Bluesky. Folks on both this and X, do you double post or do you post different things on each platform?

If you are interested in math and its intersections with biology, machine learning and other fields, then check out ICERM (icerm.brown.edu)! Consider organizing a meeting there—they make it easy. Happy to be a new member of the scientific advisory board this year.

The Institute for Computational and Experimental Research in Mathematics

icerm.brown.edu

Krishnaswamy Lab is now in bluesky in addition to X.