📢🚨 FAIRyfying Microscopy Data does not need to feel sisyphean. Talk to your local Data Steward or image analyst. They are fountains of knowledge zenodo.org/records/2085.... Also, please see our latest public data set on the Bioimage Archive: www.ebi.ac.uk/biostudies/b... Publication out soon 🎉
Marie Held
@makaefer.bsky.social
Image analyst at the Centre for Cell Imaging, the University of Liverpool. didyouknowimageanalysis.wordpress.com CCI.liv.ac.uk
In Norwich for the Fair 4 Facilities @biofair.bsky.social workshop with an intriguing program dimmestp.github.io/FAIR4Facilit... I did not know that Norwich has as many churches as it does. @quadraminstitute.bsky.social
Today the Evolve Distributed Python Training Course (www.eurobioimaging.eu/events/evolv...) is coming to its conclusion. It is the Portugal Node's turn to teach today.
London calling. As it wasn’t November and dark for a change, used some spare time to explore London
Today running Day 2 of the Evolve Distributed Python Training Course (lnkd.in/gF3kJuri). It is the UK Node's turn to teach today. Thanks to @eurobioimaging.bsky.social Euro-BioImaging for concertating four nodes: Sweden, UK, Portugal and Czech Republic.
What a week! My first Points of View was published @natmethods.nature.com Happy to start the series in 🏳️🌈 month with "On Color scales and the birth of Viridis" - looks good, allows naming of regions, AND is perceptually uniform 🎁 rdcu.be/fnPhk www.nature.com/articles/s41... #dataviz
🧠🎉 Our new preprint uncovers how a decline in autophagy drives neuronal decay in brain ageing via microtubule cytoskeleton modifications. Thanks to my team @livuni-ismib.bsky.social Funded by BBSRC. #Neuroscience #BrainAgeing #Autophagy #cytoskeleton biorxiv.org/content/10.64898/2026.05.29.728680v1
Peatlands are powerful. Here are just a few reasons why… 1. Peatland vegetation slows the flow of rainfall which helps reduce the risk of flooding in nearby towns and villages. Peatlands only cover around 3% of the world's surface but contains more carbon than all the world's rainforests.
Annual leave = balm for the soul as it described in German.
📢📺 We have a new video on YouTube. Our image analyst @makaefer.bsky.social is talking about "FAIR by Design: Practical Strategies for Reproducible Microscopy" www.youtube.com/watch?v=W6JQ...
Biochemistry Focus webinar – FAIR by Design: Practical Strategies for Reproducible Microscopy
YouTube video by Biochemistry Focus webinar series
youtube.com
🐍 Learn Python for Image Analysis — for free! UK life scientists: join EuroBioImaging's hands-on beginner course at The Crick in London (23–25 June), running simultaneously with sites in CZ, PT and SWE! ⏰ Register by 15 April — places are limited! ✈️ Travel funding may be available shorturl.at/v3Vsk
🙌 Over 100 people at the #EuroBioImgaing Image Data Community Days! Join us this week for lectures, hands-on workshops & networking sessions. Now, Aastha Mathur tells about our Image Data Services - Analysis & Beyond. #ImagingCommunity More info⤵️ www.eurobioimaging.eu/events/image...
Happening now! We are kicking off the Image Data Community Days - a full week of online workshops & events. Hope you can join us to talk about image data topics! #ImagingCommunity Register & more info⤵️ www.eurobioimaging.eu/events/image...
⏱️ Starting soon! #EuroBioImaging's Image Data Community Days event takes place online this week. Don't miss the first session starting at 🕒️ 9 am CEST TODAY to learn more about our Data Services! www.eurobioimaging.eu/events/image...
Attending Euro BioImaging's Image Data Community Days (www.eurobioimaging.eu/events/image...) this week. Also running a workshop. So it's Schroedinger's Marie in the office this week.
Explore image data analysis the FAIR way with @galaxyproject.bsky.social ! Join us April 16 🕒️ 15:00–17:00 CEST for a hands‑on introduction to web‑based, HPC‑ready workflows. #Galaxy #ImageAnalysis #FAIRdata #BioImaging #Workshop 🌌 us02web.zoom.us/meeting/regi...
Analyse public OME‑Zarr images using models from the BioImage Model Zoo! 🦒 Join us April 16 🕐️ 13:00–15:00 CEST — a perfect fit for Python 🐍 users ready for hands‑on work. @ai4life.bsky.social #OMEZarr #AIinScience #ImageAnalysis #Workshop forms.gle/5hQh1BoACPaF...
🚨🔬🚨🔬🚨 We are pleased to announce that registration for the 7th edition of the Crick BioImage Analysis Symposium #CBIAS 2026 is now open! 🕐November 23rd-24th, 2026📍The Francis Crick Institute, London. We look forward to seeing as many of you as possible there (or online 😀)
Crick BioImage Analysis Symposium 2026
We use cookies to track usage and preferences.
crick.ac.uk
⏳️ Have you registered yet? #EuroBioImaging's Image Data Community Days event is happening next week. If you're curious about biological & preclinical #imagedata analysis, management, tools & more this event is for you. Registration is FREE & open to all⤵️ www.eurobioimaging.eu/events/image...
Discover Fileglancer and explore OME‑Zarr datasets with seamless browsing and visualization ! Join us April 14 (16:00–17:00 CEST) and learn how to use it in your workflow. @hhmi-science.bsky.social #OMEZarr #BioImaging #Workshop hhmi.zoom.us/meeting/regi...
a man in a red suit and tie is saying `` assemble '' while holding a white object .
ALT: a man in a red suit and tie is saying `` assemble '' while holding a white object .
media.tenor.com
🚨🔬🚨🔬🚨 We are pleased to announce that registration for the 7th edition of the Crick BioImage Analysis Symposium #CBIAS 2026 is now open! 🕐November 23rd-24th, 2026📍The Francis Crick Institute, London. We look forward to seeing as many of you as possible there (or online 😀)
Still a few open spots! Join us April 13 & 14 🕒️ 15:00–17:00 CEST to learn how to make your microscopy research more FAIR & reproducible. Great for students, postdocs, and PIs. @makaefer.bsky.social #FAIRdata #BioImaging #Reproducibility docs.google.com/forms/d/e/1F...
I knew about pixels and voxels but was today introduced to spaxels: A spaxel (spatial pixel) is the smallest spatial element in an integral field spectroscopy dataset, representing a specific position on the sky with an associated spectrum. Taken from Maggie Aderin-Pocock‘s book WEBB‘S UNIVERSE
Want to learn #Python for #ImageAnalysis? 🐍 Supported by the #EVOLVEproject, four #EuroBioImaging Nodes are offering a distributed training course for beginners on Python - it's free! Join the course in 4 in person locations - 🇬🇧 🇵🇹 🇨🇿 🇸🇪 Apply before April 15⤵️ www.eurobioimaging.eu/events/evolv...
𝗘𝘅𝗰𝗶𝘁𝗶𝗻𝗴 𝗗𝗲𝘃𝗲𝗹𝗼𝗽𝗺𝗲𝗻𝘁𝘀 𝗶𝗻 𝗠𝗶𝗰𝗿𝗼𝘀𝗰𝗼𝗽𝘆 𝗥𝗲𝗽𝗼𝗿𝘁𝗶𝗻𝗴! If you're involved in creating, processing, or publishing microscopy data, take a look at the new checklist for reporting requirements provided by @quarep-limi.bsky.social in @jcb.org 🔗 rupress.org/jcb/article/...
Woohoo! So looking forward to the next iteration. 🤩
📣We’re back 🔬👀🖥️! #CBIAS2026 returns 23–24 November 2026: Join the bioimage analysis community to discuss advances in quantitative imaging & computational methods for image analysis. Great opportunity for early-career analysts & microscopists to present and connect. #CBIAS2026 #BioimageAnalysis
Get in touch if you want to be paid to work with us this summer. We are particularly interested in hearing from scientists who are interested in software development!
Do you want to spend the summer being paid to contribute to open source neuroscience software? We are taking part in Google Summer of Code again, offering paid, remote placements to work on one of our tools. Open to (nearly) everyone worldwide. More details: neuroinformatics.dev/get-involved...
📣 Registration for the #EuroBioImaging Image Data Community Days is open! Join us for online event centered on bioimaging & preclinical imaging data. 🗓️ April 13-17, online All are welcome! Register here ⤵️ www.eurobioimaging.eu/events/image...
Bloodstream-associated Salmonella Typhimurium and Enteritidis iNTS pathovariants hyper-replicate in human macrophages https://www.biorxiv.org/content/10.64898/2026.01.28.702237v1