Michael Doube

@mdoube.bsky.social

Pixel herder

📢 Release alert! BoneJ+ is now callable in headless mode, including specifying which GPU(s) to use. ~/Fiji/fiji --headless -Dbonej.plus.devices="1-0" --run run_all_bonej_plus.py Drop us a line if you'd like to know more and to get a demo script.

Pleased to report that I have been paid in cold hard pounds sterling for a Fast and Fair review job. Just like when I was in the clinic: payment for professional advice. Money has a purpose and this is it. Better than vouchers, crypto or Brownie points because I can do what I want with it.

Daniel Gorelick@danielgorelick.bsky.social · 2mo ago

Paying peer reviewers works. Expanded Fast & Fair experiment @biologyopen.bsky.social: • 5.5 vs 37.7 working days to decision with reviews • ~3 vs ~9 reviewer invitations per manuscript • no reduction in editor-assessed review quality • similar acceptance rates www.biorxiv.org/content/10.6...

Scatter plot showing that Fast & Fair peer review reached first decision with reviews much faster than conventional peer review: mean 5.5 versus 37.7 working days. Most Fast & Fair manuscripts met the 7-working-day target, while conventional manuscripts were slower and more variable, up to 116 working days.

📢 Release alert! BoneJ+ 0.0.20 brings stability to GPU checking on Windows and belatedly bumps the minimum Java version to 17. Check it out! Drop us a DM to get a tester voucher from @beancounter.ch

📢 Release alert! radius-r0 uses Scijava Datasets as the image format for input-output, and harmonises all the plugins to use the same results table. Scripting users will need to update their scripts to use Dataset and SharedTable; internally, functionality is the same.

It's World Swift Day! ❤️ Swifts raise their chicks high in eaves or nestboxes, returning to the same site year after year. When the young fledge, they launch into open air... & just keep going! They’ll remain airborne for the next two or three years, until it’s time to breed themselves.

Who would have thought that people would be incentivised by being paid for their expert opinions? It's normal to pay for professional services. Hopefully the big for-profit players will wake up and realise that they will have to pay too, to maintain their "premium" reputations.

Daniel Gorelick@danielgorelick.bsky.social · 2mo ago

Paying peer reviewers works. Expanded Fast & Fair experiment @biologyopen.bsky.social: • 5.5 vs 37.7 working days to decision with reviews • ~3 vs ~9 reviewer invitations per manuscript • no reduction in editor-assessed review quality • similar acceptance rates www.biorxiv.org/content/10.6...

Scatter plot showing that Fast & Fair peer review reached first decision with reviews much faster than conventional peer review: mean 5.5 versus 37.7 working days. Most Fast & Fair manuscripts met the 7-working-day target, while conventional manuscripts were slower and more variable, up to 116 working days.

Peatlands are powerful. Here are just a few reasons why… 1. Peatland vegetation slows the flow of rainfall which helps reduce the risk of flooding in nearby towns and villages. Peatlands only cover around 3% of the world's surface but contains more carbon than all the world's rainforests.

A peatland with areas of water surrounding tufts of grass in a valley. We see hills with clouds behind. Clouds are grey and white. No people are in view.

@bonej.org has been supporting the bone research community for over 15 years. Ever since the early days of the project, there have been lots of other uses. Check out this paper that used BoneJ for measuring basalt rock formation on the Moon 🌕, from the Chang'e-5 mission! doi.org/10.1029/2025...

Cooling History of Chang'e‐5 Basalts Recorded by Diffusion‐Driven Mg and Fe Isotope Fractionation

Remarkable and negatively correlated δ26Mg and δ56Fe variability at the mineral scale is observed in a Chang'e-5 basalt clast Chemical diffusion in mineral grains within a cooling melt caused the...

doi.org

Intersection of the food tube with the air tube at the larynx is a nasty evolutionary hangover, with life-threatening consequences. Why not two separate tubes for two different functions, eating and breathing? Check out this paper on how toothed whales have solved it.

SICB journals@sicbjournals.bsky.social · 3mo ago

IOB "In #odontocete #cetaceans (toothed #whales, #dolphins, and #porpoises), a #palatopharyngeal sphincter permanently anchors the laryngeal inlet in the #nasopharynx and isolates the airway from the gut tube." from A W Vogl , et al doi.org/10.1093/iob/... #science #biology #biomechanics


Fig. 1 The general arrangement of muscles and structures associated with the soft palate in a typical #mammal. Art-work ©2024 Alex Boersma (used with permission).

"the design of Facebook's and Instagram's online interfaces, which may exploit the vulnerabilities and inexperience of minors, leading to addictive behaviour and reinforcing the so-called ‘rabbit hole' effects"

European Commission@ec.europa.eu · 3mo ago

Meta's own terms indicate its services aren't for children under 13. Yet Meta is failing to keep them off Instagram and Facebook. We've found Meta in breach of the Digital Services Act. ℹ️ link.europa.eu/yPBWgY

Purple graphic with yellow stars resembling the EU flag. White text reads: “Preliminary findings: Meta in breach of Digital Services Act,” with “Meta” highlighted in a yellow box. A small European Commission logo appears in the bottom right corner.

🚨🚨🚨JOB ALERT🚨🚨🚨 The Image Analysis Unit at Human Technopole in Milan is recruiting for two positions to join our growing team: 1) Bioimage Analyst 2) Research Software Engineer (RSE) Read on to learn why one of these two people should be you!