MultiQC
@multiqc.info
Open-source tool to simplify and streamline quality control analysis, from @seqera.io
@multiqc.info has ~200 config options for customizing reports: renaming samples, reordering modules, dropping stats columns, tweaking plot defaults, and more.📊 But most users don't know what's possible, so we built a MultiQC Config Wizard. hubs.la/Q04hgKlS0
Introducing the MultiQC Config Wizard | Seqera
A new static HTML wizard for browsing, building, and validating MultiQC config files. Learn how Pydantic powers the wizard, as well as docs and VSCode integration.
hubs.la
Happy to say MultiQC v1.35 is out 🎉 The headline feature: a MultiQC Config Wizard 🧙♂️ Browse every config option with help text and examples, fill out a form with live validation, or paste in your existing YAML and have it explained and checked. Video below 👇
New year, new opportunities!🎆 Subscribe to our monthly newsletter for exclusive @nextflow.io and Seqera updates, including new product features, training sessions, events, and more. 📧 hubs.la/Q03YRwmn0
On a server bright on Christmas night, MultiQC sang, “All stats unite!” From FastQC, pipelines adored, One tidy report—what could you want more?
MultiQC v1.33 is out! 🎉 4 new modules, 60% faster parquet merging, and lots of improvements across the board. Here's what's new 🧵
a man wearing sunglasses says " brand new baby " while pointing
ALT: a man wearing sunglasses says " brand new baby " while pointing
media.tenor.com
Stay in the loop with everything @nextflow.io, @seqera.io, @multiqc.info, and more!✉️ Subscribe to our newsletter to get monthly updates on new product features, industry and community insights, events, and training workshops. 📚 Subscribe now: hubs.la/Q03Xf2NB0
Importance of being open!🌍 One of the greatest strengths of @multiqc.info is open source development.🧵What started as a one-person project in 2015 has grown into a collaborative effort involving 235 contributors today.🧵 📚 Read the blog post: hubs.la/Q03WRgb20
#NextflowSummit now available on-demand! Be sure to check out the "MultiQC turns 10" talk by @ewels.bsky.social 👀
Nextflow@nextflow.io · 8mo agoThe global #NextflowSummit by @seqera.io brought together 1,500+ attendees for an incredible showcase of bioinformatics innovations spanning translational research, automation, AI & more! 🌍 All talks are now available on-demand on YouTube 🎥 Check out the playlist: hubs.la/Q03VW5Mk0
💡A simple idea emerged from the frustration of manually parsing countless bioinformatics tool outputs.📊 That idea became MultiQC, and today we're celebrating 10 years of transforming global bioinformatics🌎 📗Read the highlights blog by @seqera.io: hubs.la/Q03TXC_N0
🎉 Celebrating 10 years of @multiqc.info! 📊 The numbers speak volumes: 🔹 Support for ~170 bioinformatics tools 🔹 1 run every 3 seconds (25k+ daily runs) 🔹 From single contributor to 235 contributors 🔹 7000+ journal citations (~8-9 per day) 📚 Discover a timeline of innovation: hubs.ly/Q03PsbTP0
🎉Celebrating 10 Years of @multiqc.info What began as a simple QC reporting tool has evolved into an essential resource used by thousands worldwide, becoming integral to the #bioinformatics ecosystm. 🔍 Discover MultiQC: hubs.la/Q03Bh0wM0
🎉 Today marks 10 years since the very first @multiqc.info commit! What started as a simple tool for QC reports has grown into something used by thousands of labs worldwide. It's become a foundational tool in the fabric of #bioinformatics and it's a joy to see it play a small part in global research
9/ Tools you need: FastQC: first defense MultiQC: overview across samples IGV: visualize coverage & peaks PCA plots: always Links: www.bioinformatics.babraham.ac.uk/projects/fa... multiqc.info/ software.broadinstitute.org/software/igv/
Seqera
Seqera | The Home for Open Science | From the creators of Nextflow, Wave, and MultiQC
multiqc.info
Did you see, #MultiQC v1.28 went out a few days ago! There are a handful of release highlights for this version, but perhaps the most exciting is that .gif, .webp and .tiff files are now supported for #CustomContent - you can finally put your favourite gifs into reports! Just name them *_mqc.gif
a man in a red sweater is dancing in a living room in front of a fireplace .
ALT: a man in a red sweater is dancing in a living room in front of a fireplace .
media.tenor.com
🔗 QC reads with FastQC: www.bioinformatics.babraham.ac.uk/projects/fa... RNAseqqc github.com/getzlab/rna... 🔗 Check out multiQC for aggregated reports:multiqc.info/ multiqc.info/🔬 Learn to visualize data with IGV: software.broadinstitute.org/software/igv/ Start every analysis with rigorous QC! 🚀
Seqera
Seqera | The Home for Open Science | From the creators of Nextflow, Wave, and MultiQC
multiqc.info
One of my top tools for primary data quality analysis, so essential for downstream analyses: #MultiQC. This recent update is incredibly useful! seqera.io/multiqc/ github.com/MultiQC/Mult...
MultiQC | Seqera
Aggregate results from bioinformatics analyses across many samples into a single report
seqera.io
The gold standard in #bioinformatics reporting just got even better! #AI Summaries are now available in @multiqc.info🎉 Find out more: hubs.la/Q033Kjp30
MultiQC v1.27 was released yesterday. It includes one major new feature: === ✨ AI summaries ✨ === LLMs are a natural next step for helping scientists understand large datasets. @multiqc.info now has built-in integration with @seqera.io AI as well as #OpenAI and #AnthropicAI 🤖
I'm excited to see my contributions made it into this version! It was a lot easier to add new modules than I expected. If anyone is wishing a tool was supported, you should just try adding it.
MultiQC@multiqc.info · 2y ago🆕 10 new modules supporting new tools in this release: - MosaiCatcher - ataqv - telseq - Cell - GTDB - Checkm - Checkm2 - Haplocheck - mgikit - Percolator
Nice tiny Xmas gift in the new release 🎄. Percolator feature weights can be simply plotted now with multiQC!
Sneaking a little holiday gift in at the last moment: @multiqc.info v1.26 just released! - 🆕 10 new tools supported - 💫 12 modules updated - 🛠️ Bug fixes, improvements and refactoring! If you're quick, you might see a little christmassy easter egg! github.com/MultiQC/Mult...
I'm looking for a nice pull-quote about @multiqc.info that we can use in some @seqera.io materials, if anyone fancies dropping something nice into the comments as an early Christmas present for me, that would be much appreciated! 🙏🏻 😅
🍎 Master the art of Quality Control for NGS data with @galaxytraining.bsky.social! Learn how to assess, improve, and summarize sequencing quality using tools like FASTQC, Cutadapt, and MultiQC. Catch errors early and save time on downstream analysis! training.galaxyproject.org/training-mat...
Sequence analysis / Quality Control / Hands-on: Quality Control
Analyses of sequences
training.galaxyproject.org
A highlight of this release is improved config parsing, with better support for environment variables 💫 Every MultiQC config option can now be set via an env var, and YAML configs can interpolate env vars into their strings:
Just out: @multiqc.info v1.25.2 🎉 This patch release fixes a whole host of bugs, the most important one being for #bcl2fastq 🐛 There are also a host of small additions sneaking in for #ngsbits, #picard, #Nanostat, #Samtools and more - so well worth the update! github.com/MultiQC/Mult...
Release v1.25.2 · MultiQC/MultiQC
MultiQC v1.25.2 - 2024-11-20 Multiple bug fixes and minor updates. Updates Add natural sort for sample sorting (#2959) Custom content: for plot_type: image, support custom_data config with section...
github.com
Hey! I recently started blogging again at blog.stephenturner.us I used to write at gettinggeneticsdone.blogspot.com. Check out @ewels.bsky.social's talk on @multiqc.info at this year's @nextflow.io summit. I wrote about it here: blog.stephenturner.us/p/nextflow-s...
Paired Ends | Substack
Bioinformatics, computational biology, and data science updates from the field. Occasional posts on programming. Click to read Paired Ends, a Substack publication with thousands of subscribers.
blog.stephenturner.us
