I spent most of my time at the 2024 #Nextflow @nf-co.re hackathon working on genomeqc. Happy to see our preprint finally published: nf-core/genomeqc: a best-practice pipeline for comparing genome and assembly quality: www.biorxiv.org/content/10.6... 🧬💻🧪 github.com/nf-core/geno...

⏰ If you're looking to join us in Barcelona for Nextflow Training or the @nf-co.re Hackathon on October 15-16, today is your last chance to save 25%: hubs.la/Q04rsgWS0 #NextflowSummit

What's Happening? 🔹 Beginners Training - Learn how to build and run multi-step Nextflow workflows 🔹 Advanced Training - Explore advanced Nextflow capabilities to help you develop 🔹 @nf-co.re Hackathon - Collaborate on projects with the Nextflow community

Join us in Barcelona on Oct 15-16 for @nextflow.io Training or the @nf-co.re Hackathon at the #NextflowSummit 2026!👩‍💻Register by Jul 31 for 25% off: hubs.la/Q04qFpbC0

I cannot tell you how many times I've written basically this QC pipeline. Countless! Uncountable! Glad to see this addition to @nf-co.re. Also, @tfenne.bsky.social, is this the first nf-core pipeline with Riker support? Or did I miss one? github.com/nf-core/seqi...

Happening right now: join @ewels.bsky.social in a @nf-co.re #bytesize talk to hear all about our newest feature: monthly Newsletters! nf-co.re/events/2026/...

Bytesize: nf-core newsletter

Phil Ewels, Seqera

nf-co.re

Interested in learning @nextflow.io?🌟Explore our upcoming Nextflow events and training opportunities below🧵 💻 What: Webinar - What's New in Nextflow 26.04 📅 When: TODAY 📍 Where: Online seqera.io/events/what-...

What's New in Nextflow 26.04: Strict Syntax, Records, Static Typing & the Module Registry | Seqera

At the Nextflow Summit Boston, we announced the release of Nextflow 26.04, with new capabilities to help you write bug-free pipeline code and catch errors early. We also introduced the Nextflow Module...

seqera.io

TaxProfiler, the @nf-co.re #metagenomics pipeline had a new major release, adding multiple cool new classifiers (metacache, sylph and melon)! Great work by Sofia, @lilianderssonli.bsky.social , @jfy133.genomic.social.ap.brid.gy and others! 🙌 github.com/nf-core/taxp...

Release v2.0.0 - Crazy Corgi · nf-core/taxprofiler

Added #682 Added metacache classifier and improved nf-tests (added by @sofstam) #559 Profiling of long reads with motus (added by @LilyAnderssonLee and @sofstam ) #591 Add options to enable the ab...

github.com

nf-core@nf-co.re · 5mo ago

Pipeline release! nf-core/taxprofiler v2.0.0 - v2.0.0 - Crazy Corgi! Please see the changelog: https://github.com/nf-core/taxprofiler/releases/tag/2.0.0

Final call for our nf-core workshop! ⏳🧬 Applications close this Wednesday, 13 May. Don't miss your chance to master workflow customisation for @nf-co.re pipelines with our expert trainers. Apply here: www.biocommons.org.au/events/nf-co... @sydney-crf.bsky.social

WORKSHOP: Unlocking nf-core: customising workflows for your research — Australian BioCommons

A practical workshop to set you up with the foundational knowledge required to run and customise nf-core workflows in a reproducible manner. More information Apply

biocommons.org.au

Self-paced Online Nextflow Training from the Nextflow Creators!🎓 Join @seqera.io on May 11-15 for Nextflow Training Week. Whether you're completely new to workflow management or ready to advance your skills, there's something for you. 🔗 Register now: hubs.la/Q04fnXdz0

Who doesn't love swag?🔥 Check out the latest from the #NextflowSummit. @nextflow.io, @seqera.io, and @nf-co.re goodies - stickers and socks from the nf-core hackathon and training here in Boston!

Super excited to be launching two things today: #RustQC 🦀🧬 and rewrites.bio 🚀 I used AI to rewrite 15 RNA-seq QC tools into a single Rust binary (I've never written any Rust). It ended up being over 60x faster. Here's the story 🧵 seqeralabs.github.io/RustQC/

Welcome to RustQC

Fast quality control tools for sequencing data, written in Rust.

seqeralabs.github.io

We're thrilled to welcome 46 new Nextflow Ambassadors in 2026!🌍 This milestone brings our global community to a remarkable 143 ambassadors across 40 countries (our largest cohort ever).🎉 Here's to building the future of scientific workflows together! 🚀

Nextflow Ambassador Nour Mahfel shares her journey from complete beginner to @nf-co.re contributor with support from @seqera.io. Learn how she shifted her mindset to think in dataflow, upstream modules, and embrace working in the open.📚 hubs.la/Q03_gcw_0

New blog post! Running nf-core pipelines on ARM https://nf-co.re/blog/2026/arm-pipelines/

Today I figured how to use Nextflow to analyse my RNA seq data: very happy. @nf-co.re

Les organisateurs des #JOBIM2026 vous souhaitent une ✨ bonne année 2026 ✨ ! 📣 Rappel : l’appel à mini-symposia est ouvert ✅ 🚨 Il vous reste 8 jours pour soumettre vos propositions ! 📅 Deadline : 21 janvier ! 🔗 Infos & modalités : premc.org/jobim-2026/ #JOBIM2026 #bioinfo #symposium #Strasbourg

New blog post! nf-core and AI https://nf-co.re/blog/2026/statement-on-ai/

Kickstart 2026 with all the latest features of Nextflow, including static types & workflow inputs/outputs!🚀 Watch the latest @seqera.io webinar showcasing these capabilities using @nf-co.re /RNAseq! 👀 Watch on-demand: hubs.la/Q03ZRYYg0

On a server bright on Christmas night, MultiQC sang, “All stats unite!” From FastQC, pipelines adored, One tidy report—what could you want more?

Pipeline release! nf-core/phaseimpute v1.1.0 - 1.1.0 - Purple Beagle! Please see the changelog: https://github.com/nf-core/phaseimpute/releases/tag/1.1.0

Release 1.1.0 - Purple Beagle · nf-core/phaseimpute

What's Changed This release adds two new imputation tools: Beagle5 and Minimac4. It also updates the templates to match the latest version of nf-core (v3.5.1). Special thanks to Kübra Narci and Die...

github.com

Pipeline release! nf-core/riboseq v1.2.0 - nf-core/riboseq v1.2.0 - Mercury Spider! Please see the changelog: https://github.com/nf-core/riboseq/releases/tag/1.2.0

Release nf-core/riboseq v1.2.0 - Mercury Spider · nf-core/riboseq

What's Changed Json schema improvements by @andreirie in #103 Important! Template update for nf-core/tools v3.4.1 by @nf-core-bot in #111 Feat ribowaltz by @iraiosub in #113 Feat tubemap by @iraio...

github.com

Pipeline release! nf-core/variantbenchmarking v1.4.0 - Thin Yasar! Please see the changelog: https://github.com/nf-core/variantbenchmarking/releases/tag/1.4.0

Release Thin Yasar · nf-core/variantbenchmarking

What's Changed Pipeline Release 1.4.0 by @kubranarci in #253 New functions Adding concordance analysis for query samples by @kubranarci in #237 239 add happy sompy and truvari in multiqc report ...

github.com

Pipeline release! nf-core/sarek v3.7.0 - 3.7.0 - Saltoluokta! Please see the changelog: https://github.com/nf-core/sarek/releases/tag/3.7.0

Pipeline release! nf-core/rnavar v1.2.2 - nf-core/rnavar 1.2.2 - Gray Red Tail! Please see the changelog: https://github.com/nf-core/rnavar/releases/tag/1.2.2

Release nf-core/rnavar 1.2.2 - Gray Red Tail · nf-core/rnavar

What's Changed use nf-core-utils by @maxulysse in #233 Important! Template update for nf-core/tools v3.4.0 by @nf-core-bot in #242 Important! Template update for nf-core/tools v3.4.1 by @nf-core-b...

github.com

Pipeline release! nf-core/mag v5.3.0 - mag 5.3.0 - Rainbow Rattlesnake! Please see the changelog: https://github.com/nf-core/mag/releases/tag/5.3.0

Pipeline release! nf-core/rnaseq v3.22.1 - nf-core/rnaseq v3.22.1 - Polished Palladium Penguin! Please see the changelog: https://github.com/nf-core/rnaseq/releases/tag/3.22.1

Release nf-core/rnaseq v3.22.1 - Polished Palladium Penguin · nf-core/rnaseq

What's Changed Bump after release 3.22.0 by @pinin4fjords in #1640 add ARM CI test by @mashehu in #1641 Long merge rsem by @EladH1 in #1642 Fix HISAT2 issues: BAM CSI index with UMI deduplication ...

github.com

The Nextflow training sessions are in full swing here in the UK, complete with all our favorite Nextflow, @nf-co.re, and @seqera.io swag! 🎉

Here's a little easter egg for those of you using @seqera.io #platform.. 🥚 ✨ Recently we released a new feature that lets you set custom pipeline icons. What's less well known is that animated icons are also supported - party time!! 🪩 🥳 🎉 The trick is to rename your .gif to a .png file extension 🤫

That feeling when AI can create cat videos with better @nextflow.io training content than you've made in years.. 😻 😹 Could this be the new face of #Nextflow at @seqera.io ?!