Pablo Meyer
@oldbap.bsky.social
IBM research, DREAM challenges director, rabdomante, Sys Bio,👃🏽alma-mater UNAM
A semantic-based community model for high-fidelity tuning of olfactory mixture distances | PNAS www.pnas.org/doi/10.1073/... @dreamchallenges.bsky.social
PNAS
Proceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans...
pnas.org
Today is DREAM COSI inaugural session on agent benchmarking! #ISMB2026 check the program: www.iscb.org/ismb2026/sci...
DREAM
ISCB - International Society for Computational Biology
iscb.org
ISCB News@iscb.bsky.social · last mo.The combination ISCB July newsletter and #ISMB2026 conference programme are now available! Check it out here: https://tinyurl.com/mtwherrv
Happy to be back in Paris! Thanks for the invite Nico!
Institut Jacques Monod@ijmonod.bsky.social · 5mo ago📢 Institut Jacques Monod Seminar 📅 March 20th 📍 Institut Jacques Monod Invited by the @minclab.bsky.social, Pablo Meyer Rojas will present the Institut Jacques Monod seminar "Pre-training DNA language models to make them understand Biology " ➡️ buff.ly/HIWojfx
📢 Institut Jacques Monod Seminar 📅 March 20th 📍 Institut Jacques Monod Invited by the @minclab.bsky.social, Pablo Meyer Rojas will present the Institut Jacques Monod seminar "Pre-training DNA language models to make them understand Biology " ➡️ buff.ly/HIWojfx
🚨 #ISMB2026 Proceedings submissions are due tomorrow, January 20 by 23:59 Anywhere on Earth (no exceptions). 📥 Submit here: https://www.iscb.org/ismb2026/call-for-submissions/proceedings
New preprint with @bckwon.bsky.social use LLMs to summarize and visualize evidence for new gene-disease associations.
bioRxivpreprint@biorxivpreprint.bsky.social · 8mo agoGENET: AI-Powered Interactive Visualization Workflows to Explore Biomedical Entity Networks https://www.biorxiv.org/content/10.64898/2025.12.12.694029v1
Una nación que comparte un pasado europeo, un espacio norteamericano y un alma en la naturaleza que la rodea: 'Breve historia de Canadá', de Jean Meyer. #Novedad #PróximamenteEnTuLibrería Nueva #ColecciónBrevesHistoriasDePaísesDeAmérica buff.ly/cqo2Ozh
🧠Can AI agents predict #Alzheimers? Participate in our DREAM challenge agentic track to find out! We provide unique training + test data for AI agents: snRNA-seq, IHC, stage, etc synapse.org/Synapse:syn6... Also co-submit your agent paper to agents4science.stanford.edu
‘It is because agents never know completely what they are doing that what they do has more sense than they know.’ Pierre Bourdieu
So here are the results of 2 years of hard work: BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects It's a simple concept: encode DNA variants in your pre-training and get better fine-tunning results. Paper: www.arxiv.org/abs/2507.05265 Code: github.com/BiomedSciAI/...
BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects
Large language models (LLMs) trained on text demonstrated remarkable results on natural language processing (NLP) tasks. These models have been adapted to decipher the language of DNA, where sequences...
arxiv.org
ISMB/ECCB 2025: Join us for the DREAM Challenges session on Monday, 21 July, 14:00 Explore community-driven benchmarking for Foundation Models—run a live experiment for LLMs. @bowang87.bsky.social @anshulkundaje.bsky.social @cziscience.bsky.social @mariabrbic.bsky.social @juliosaezrod.bsky.social
Our paper on SNP-aware DNA foundation model is out!
arXiv q-bio.GN Genomics@qbiogn-bot.bsky.social · last yr.Li, Dey, Kwon, Danziger, Rosen-Tzvi, Hu, Kozloski, Tsou, Dandala, Meyer: BMFM-DNA: A SNP-aware DNA foundation model to capture variant effects https://arxiv.org/abs/2507.05265 https://arxiv.org/pdf/2507.05265 https://arxiv.org/html/2507.05265
Dandala, Danziger, Barkan, Biswas, Gurev, Hu, Madgwick, Koseki, Kozlovski, Rosen-Zvi, Shimoni, Tsou: BMFM-RNA: An Open Framework for Building and Evaluating Transcriptomic Foundation Models https://arxiv.org/abs/2506.14861 https://arxiv.org/pdf/2506.14861 https://arxiv.org/html/2506.14861
See you in Liverpool!
@dreamchallenges.bsky.social · last yr.At DREAM we have been benchmarking and discussing methods in biology for the past 15 years, but foundation models are a different beast, come join us for a special session @ISMB on this Monday July 21st 2pm @chanzuckerberg.bsky.social @tempusai.bsky.social @ebi.embl.org www.iscb.org/ismbeccb2025...
With a contemporary smartphone, capturing, transmitting, and replicating sounds and visuals is a breeze, yet replicating scents remains elusive. If you want to change this, consider joining the 2025 DREAM Olfaction Challenge at www.synapse.org/Synapse:syn6.... @oldbap.bsky.social
DREAM Olfactory Mixtures Prediction Challenge 2025
'DREAM Olfactory Mixtures Prediction Challenge 2025' (Synapse ID: syn64743570) is a project on Synapse. Synapse is a platform for supporting scientific collaborations centered around shared biomed...
synapse.org
A very important from our group #compchemsky #aiforscience #quantumchemistry El Agente calculates complex quantum chemistry calculations from natural language! Please re-share with your network. @thematterlab.bsky.social @uoft.bsky.social #nvidia
Acceleration Consortium@accelerationc.bsky.social · last yr.👋 🤖 Meet El Agente–an autonomous AI for performing computational chemistry, made by the Matter Lab @uoft.bsky.social. This #LLM-powered multi-agent system making computational chemistry more accessible will soon be available worldwide. Sign up 4 the launch: acceleration.utoronto.ca/news/meet-el...
As promised, a 'skeet' -orial on our paper published last week !
Cell - a Cell Press journal@cp-cell.bsky.social · last yr.Now online! Engineering TCR-controlled fuzzy logic into CAR T cells enhances therapeutic specificity
I.B.M. Insha’llah, ‘Bukra,’ & ‘Ma’lesh, a typical Egyptian expression which roughly translate, respectively, as “God willing,” “tomorrow” and “no matter”. The ancient and poetic version of procrastinating.
