Four years ago I got a Wellcome Trust fellowship to explore how gene transfer agents, particles that evolved from phages to facilitate horizontal gene transfer, assemble differently. And we discovered they assemble biofilm-targeting tailspikes around their tail www.biorxiv.org/content/10.6...
Pavol Bardy
@pavol.bsky.social
Structural and molecular biologist working at the University of York exploring the possibilities of CryoET in the study of microbes
I am very proud to my student Stasia whose manuscript about the nucleocapsid assembly of an ephemerovirus is now available to read. Within three years she managed to defend her thesis, submit the manuscript and secure a postdoc job, while adapting to the UK weather! www.biorxiv.org/content/10.6...
Cryo-electron microscopy structure of the bovine ephemeral fever virus RNA-nucleoprotein assembly
Bovine ephemeral fever virus (BEFV), a member of the Rhabdoviridae family, is an arthropod-borne pathogen that causes acute febrile disease in cattle. The structural basis of its genome encapsidation ...
biorxiv.org
Celebrating 50 years of ysbl and structural biology in York, seeing all former colleagues including @cryingem.bsky.social and @poojag96.bsky.social And it was a perfect occasion for summarizing outcomes of my Wellcome fellowship. Thanks all for organizing!
You know exactly when your auto zlp f×cked things up and when you noticed and fixed it (at 5am).
Great work run by @emmajbanks.bsky.social and @tunglejic.bsky.social showing that the gta lytic system in caulobacter evolved from a phage antidefence system. It was fun to collect tomo of these at SLAC and segment them with Mai at YSBL. www.nature.com/articles/s41...
A bacterial CARD–NLR-like immune system controls the release of gene transfer agents - Nature Microbiology
An immunity-like system functions as a lysis control hub to promote gene transfer agent particle release from host bacterial cells, suggesting that bacterial immune systems may be co-opted to promote ...
nature.com
We identified a new type of what seems to be a gene transfer agent in the most abundant gut microbe. Long read sequencing was the key here, as it showed suspiciously many 4kb and 8kb reads, which fits the smallest T=3 shrinked and T=3 regular capsids. And indeed, GTAs! www.nature.com/articles/s41...
Large-scale capsid-mediated mobilisation of bacterial genomic DNA in the gut microbiome - Nature Communications
Here, the authors show that packaging of bacterial DNA by phage-like particles is widespread in the gut microbiome, with activity of gene transfer agents being prominent in Oscillospiraceae and Rumino...
nature.com
Was invited to give a talk about tomography at ccp4 summer school. The most important slide is done
Same screen, three weeks later. At SLAC they sure know how to teach you to fib mill. Now, how to interpret the #tomo data?
My second visit to SLAC-Stanford to learn more about cryoET. Look at the size of that screen! This is going to be fun!
We still have space for additional attendees, and we encourage you to share this invitation within your networks so others can benefit from the fantastic panel we have assembled for this edition. Better program than your favourite paid conference - just saying 😉
The program for the 3rd MGE Workshop is now live! Check out this year's speakers using the link below. The deadline for registration closes on Friday 30th May ⏰ We look forward to seeing you all in Southampton in a few weeks time! #MGE #MGEWorkshop #Southampton www.ukmgeworkshop.org
Could an immune system control release of gene transfer agents? Contributed here with tomograms of Caulobacter (check the beautiful segmentations done by my PhD student Mai) showcasing how the cell envelope changes when the immune system is present vs absent.
1/ Excited to share our latest work on gene transfer agents (GTAs) in Caulobacter crescentus, led by Emma Banks in collaboration with Pavol Bardy and Mai Nguyen from York!!! See a brief thread below. shorturl.at/o6S1w
"You cannot take a dewar from York to Leeds without a car!" "Hold my pint, mate!" #cryoEM @astburycentre.bsky.social
In toto #CryoET shows that Ebor, the representative of a single jelly roll fold #virus lineage, uses five receptor-binding protrusions to bring a single #capsid penton closer to the #host membrane, triggering subunits dissociation from the centre - penton blooming. journals.asm.org/doi/10.1128/...
#cryoEM #cryoET #virus #assembly PhD project at Uni of York, UK - apply by the end of tomorrow www.findaphd.com?pj=164040