Today @philouail.bsky.social received the Open Research Award from Eurac Research for her contributions to open and collaborative #metabolomics . Very well deserved! 💪🥳 #proudPI

let's get the community rolling 💪! Thanks to Vilhelm Suksi from @antagomir.bsky.social 's group for the contribution of the notame vignette 🙌

Phili@philouail.bsky.social · 7mo ago

🚀 New release: Metabonaut v1.4.0 is here! 1️⃣ New integration with the notame package for robust feature selection. 2️⃣ Added GNPS2 FBMN export for molecular networking. Explore the updates: rformassspectrometry.github.io/Metabonaut/ #Metabolomics #RStats #OpenScience #MassSpec #Bioconductor

🚀 New release: Metabonaut v1.4.0 is here! 1️⃣ New integration with the notame package for robust feature selection. 2️⃣ Added GNPS2 FBMN export for molecular networking. Explore the updates: rformassspectrometry.github.io/Metabonaut/ #Metabolomics #RStats #OpenScience #MassSpec #Bioconductor

Exploring and Analyzing LC-MS Data

This resource hosts tutorials and end-to-end workflows describing how to analyze LC-MS/MS data, from raw files to annotation, using Bioconductor packages.

rformassspectrometry.github.io

my workshop is available here: jorainer.github.io/xcms4gnps2/ - with contribution from @philouail.bsky.social

Great work from @philouail.bsky.social 🙌 #xcms now fully integrated into @bioconductor.bsky.social 💪 👉 #metabolomics #MassSpectrometry #rstats

Steffen Neumann@sneumann.bsky.social · 8mo ago

Out now! xcms in Peak Form: Now Anchoring a Complete Metabolomics Data Preprocessing and Analysis Software Ecosystem doi.org/10.1021/acs.... with Phillipine and @jorainer.bsky.social (EURAC), @metabomichael.bsky.social, Hendrik and Norman from @ipbhalle.bsky.social, @janstanstrup.bsky.social, et al.

@philouail.bsky.social presenting the #Metabonaut tutorials for #metabolomics data analysis at #EuroBioC2025 @bioconductor.bsky.social conference. @human-dn.bsky.social #MassSpectrometry #ProudPI

Philippine @philouail.bsky.social presenting #xcms , summary of 20 years development and recent extensions at the #MetSoc2025 conference! #ProudPI 😎 #rstats @bioconductor.bsky.social #metabolomics #MassSpectrometry

@jorainer.bsky.social and @philouail.bsky.social gave a great overview of the ecosystem around #RforMassSpectrometry and #XCMS! #MetSoc25 I am super glad they now also provide options to combine with #Python and #matchms (thanks🙏)

🚀 New in Metabonaut: tested xcms on a 4,000+ sample LC-MS dataset — all on a laptop! 💻 Fully reproducible + now possible thanks to dev improvements in xcms. Vignette: rformassspectrometry.github.io/Metabonaut/a... Big thanks to @jorainer.bsky.social #RStats #MassSpec #OpenScience #Metabonaut

Work from @philouail.bsky.social with contributions from William Kumler, Pablo Vangeenderhuysen and Carl Brunius! Thanks! 🥳

And big thanks also to the @eubic-ms.org hackathon team contributing to our #SpectriPy package github.com/RforMassSpec... ! Next on the list submission of the package to 👉 @bioconductor.bsky.social

GitHub - rformassspectrometry/SpectriPy: Interfacing R's Spectra package with the Python world.

Interfacing R's Spectra package with the Python world. - rformassspectrometry/SpectriPy

github.com

Phili@philouail.bsky.social · last yr.

Combine R + Python seamlessly for LC-MS/MS annotation using #SpectriPy 🧬 Fully reproducible with public #MetaboLights data 🔗 rformassspectrometry.github.io/Metabonaut/a... #RStats #MassSpec

One thing maybe not discussed enough is the long term opportunity cost of not investing and supporting open source software. Imagine the more and better Blenders, GIMPs, Firefoxs, InkScapes, QGISs etc we would of had (+ could have) if open source was taken more seriously by government and businesses

Je ne ferai pas de starter pack. Ni de dessins copiant Ghibli sans l'autorisation de Miyazaki. Ces images générées par IA sont irrespectueuses pour des artistes déjà précaires. Et c'est un gouffre énergétique insensé. Je préfère qu'il reste de l'eau et de l'art à nos enfants.

Combine R + Python seamlessly for LC-MS/MS annotation using #SpectriPy 🧬 Fully reproducible with public #MetaboLights data 🔗 rformassspectrometry.github.io/Metabonaut/a... #RStats #MassSpec

LC-MS/MS Data Annotation using R and Python

rformassspectrometry.github.io

🚀 Starting the week by sharing Metabonaut: rformassspectrometry.github.io/Metabonaut/ A collection of comprehensive tutorials for LC-MS/MS data analysis in R! Learn raw data processing, annotation & stats with xcms, RforMassSpectrometry & Bioconductor—all reproducible & community-driven! #rstats