📢📢 We are hiring a Bioimage Analyst at the BioVisionCenter! 📢📢 Join our collaboration with the Flow Cytometry Facility and contribute back to the international efforts on open standards for bioimaging data! More information here, reach out if you have any question: jobs.uzh.ch/job-vacancie...

UZH: Bioimage Analyst

The University of Zurich is the largest university in Switzerland and one of the most prominent in Europe. For research purposes the Biovision Center and Flow Cytometry Facility offer services to supp...

jobs.uzh.ch

Amazing to be at #OME2026 & talk about the future of OME-Zarr. @virginieuhlmann.bsky.social @lorenzocerrone.bsky.social & I were very happy to present the BioVisionCenter, ngio and Fractal yesterday. If you want to learn more, check out today’s ngio workshop: github.com/BioVisionCen...

Back from ICLR 2026 in Rio! 🇧🇷 Highlights: presenting my poster at the LMRL workshop, Copacabana sunsets☀️, and the best coincidence: finding out my best friend got in too without us even planning it! 👯‍♀️ So grateful to @virginieuhlmann.bsky.social for the support. Where to next? 🚀

I think it's very nice to read "here's what your $5400 a paper goes towards", but it's still charging $5400 so that we (scientists) provide content that we (scientists) review without pay and we (scientists) often have to pay to read at the end

Check out @cfusterbarcelo.bsky.social's latest cool work! Domain shift, we are watching you 👀👀👀

Caterina Fuster Barceló@cfusterbarcelo.bsky.social · 5mo ago

Are FMs actually FMing? ⛓️🔬 Thrilled to share that our paper on Foundational Models for mitochondria segmentation in EM is heading to the @iclr-conf.bsky.social 2026 LMRL Workshop! 🚀 Check out the full work here: 📄 ArXiv: arxiv.org/abs/2602.08505 📄 OpenReview: openreview.net/forum?id=Bba...

Are FMs actually FMing? ⛓️🔬 Thrilled to share that our paper on Foundational Models for mitochondria segmentation in EM is heading to the @iclr-conf.bsky.social 2026 LMRL Workshop! 🚀 Check out the full work here: 📄 ArXiv: arxiv.org/abs/2602.08505 📄 OpenReview: openreview.net/forum?id=Bba...

Are Vision Foundation Models Foundational for Electron Microscopy Image Segmentation?

Although vision foundation models (VFMs) are increasingly reused for biomedical image analysis, it remains unclear whether the latent representations they provide are general enough to support effecti...

arxiv.org

Very happy to share some more pics! What an amazing week! I am still recovering! Thank you so much to you all❤️‍🩹🥲

Joel Lüthi@joelluethi.bsky.social · 9mo ago

Plus more hacking pictures I forgot to attach to the workflows effort 😅

More amazing organisers & helpers! @tischi.bsky.social @vladimirulman.bsky.social @normanrz.com @perlman.bsky.social @virginieuhlmann.bsky.social @lorenzocerrone.bsky.social @cfusterbarcelo.bsky.social & Valentina Marcelli (13/14 🧵)

A major refresh of the OME-NGFF website (ngff.openmicroscopy.org), making it clearer, more accessible, and easier to navigate (5/14 🧵)

We had an amazing OME-NGFF hackathon last week, Wednesday to Friday, following the inspiring OME-NGFF symposium. What a fantastic week! It’s hard to describe how motivating it is to be surrounded by so many talented, curious & friendly people who care deeply about open, FAIR bioimaging data. 1/14 🧵

We wrapped up the symposium part of our 2025 International OME-NGFF workshop on Tuesday. What a phenomenal two days! I'm humbled by the incredible positive energy, talent, and enthusiasm that filled this event.

Had an amazing week in Saarbrücken at 🧫 Cell Physics 2025, @uni-saarland.de. Visiting some old friends, making some new ones and enjoying life sciences in such a great 🍂autumn🍁 environment!

You may think it has finished but 🦒 AI4Life -@ai4life.bsky.social - is very much alive✨! Check out my presentation at Cell Physics conference today at Saarbrücken! You can check it in Zenodo! zenodo.org/records/1730...

Happy to share that ShapeEmbed has been accepted at @neuripsconf.bsky.social 🎉 SE is self-supervised framework to encode 2D contours from microscopy & natural images into a latent representation invariant to translation, scaling, rotation, reflection & point indexing 📄 arxiv.org/pdf/2507.01009 (1/N)

We're happy to announce the 2025 International OME-NGFF workshop 🎉 📅 Dates: - Symposium: Nov 10–11, 2025 - Hackathon: Nov 12–14, 2025 📍 Location: Zurich, Switzerland Full details & registration: www.biovisioncenter.uzh.ch/en/events/Up...  #bioimaging #openscience #OMENGFF #OMEZarr (1/x 🧵)

Prou (ex-)supervisor & (always) mentor of @ai4life.bsky.social @egomezm.bsky.social Teresa Zulueta Coarasa; @danifranco93.bsky.social @cfusterbarcelo.bsky.social Carlos Garcia Lopez de Haro @uc3m @cienciauc3m

First workshop is rolling! 🚀 We’re diving into the BioImage Model Zoo @bioimageIO — where life scientists meet powerful AI tools for bioimage analysis. Let’s explore what’s inside the Zoo! 🐾

No he podido evitar pensar en la charla que di en el @t3chfest.es al ver este vídeo de @tamayostuff.bsky.social desmontando el lobby de las revistas científicas. No todo lo que brilla es oro y no todos los artículos científicos son verdad. www.youtube.com/watch?v=xq3X...

Colamos un ESTUDIO FALSO en una revista científica | Así funcionan los PREDATORY JOURNALS

YouTube video by TAMAYO

youtube.com

Caterina Fuster Barceló@cfusterbarcelo.bsky.social · last yr.

Además, tenéis mis diapositivas del #t3chfest10 disponibles en Zenodo.org por si os habéis perdido algún detalle! 📡 👉 zenodo.org/records/1501...

Thank you #neubiaspasteur2025 for the great energy! My slides on AI-based bioimage analysis pipelines (and SAMJ!) are now up on Zenodo. I hope you took away something new! 💡 🔗 zenodo.org/records/1539...

Thank you very much to @florianjug.bsky.social and The Column for such an amazing talk! It’s always great to hear from you! #neubiaspasteur2025

Great recipe from @cfusterbarcelo.bsky.social on how to train a DL model

🚀 Materials from my session on Advanced CNNS — (slides + notebook) now available on Zenodo! An introduction and very practical pov on CNNs and hands-on tasks on classification, detection & segmentation. 🔗https://t.co/g8KCMprM1C

Wrapping up an incredible two days at EPFL! From inspiring talks & workshops to lab visits & great conversations, it’s been amazing connecting with new and old friends. Sad to leave so soon—thanks for having me! Until next time! 🚀🔬💙

📝 Slides & workshop materials are now available! 🎉 If you missed my talk at EPFL Open Microscopy 2025, you can find everything on Zenodo: 🔗 zenodo.org/records/1502... Also includes deepImageJ & SAMJ guides for the afternoon workshop! 🧬🔬

🚀 Excited to be at EPFL Open Microscopy & AI Workshop 2025 today, sharing insights on deep learning for bioimage analysis! 🎤🔬 Let's talk AI & microscopy! 🤖🧬 www.epfl-open-microscopy.com

EPFL Workshop on Open Microscopy & AI

epfl-open-microscopy.com

Además, tenéis mis diapositivas del #t3chfest10 disponibles en Zenodo.org por si os habéis perdido algún detalle! 📡 👉 zenodo.org/records/1501...

Muchísimas gracias a toda la gente que ha asistido a mi charla en el #t3chfest10 👏 He disfrutado un montón gracias a este maravilloso público! Muchas gracias también a la organización @t3chfest.es 🚀📡

Muy buena la charla de @cfusterbarcelo.bsky.social aplicando ciencia para combatir la desinformación, tanto por contenido como de forma. Enhorabuena… #t3chfest10

Me vengo al track 2 a escuchar a @cfusterbarcelo.bsky.social que nos va a hablar de paranoicos de las antenas, esto promete #t3chfest10

Si te has quedado sin entrada, podrás disfrutar de mi charla a través del LIVE de YouTube! No te pierdas como fue discutirse contra negacionistas del 5G! #t3chest10 👉🏻 www.youtube.com/live/gM5SvaV...

🔴 Track 2 | Ahora «Desinformación y Antenas de Telecomunicación: Cómo Combatir el Mi...» T3chFest 10

YouTube video by T3chFest

youtube.com