David A. Delgadillo
@daverdude.bsky.social
Organic-Natural Products-Medicinal-Analytical- Chemist. Postdoc in the Nelson Group @Caltech leveraging electron diffraction to discover natural products. Trying to do more with less. https://orcid.org/0000-0002-0897-4470
New paper with @barriewilks.bsky.social. There are many reports on fasamycins and formicamycins (aka accramycins, naphthacemycins, streptovertimycins). Here, we unambiguously solve their structures and stereochemistry. A great effort, led by Dr Edward Hems pubs.acs.org/doi/10.1021/...
Using X-ray Crystallography and 1,n-ADEQUATE NMR to Revise the Structures of Highly Substituted Aromatic Natural Products: The Absolute Configuration of Formicamycin Congeners
Formicamycins and their biosynthetic precursors, the fasamycins, form part of the phenylnaphthacenoid family of polyketide natural products. A recent atroposelective total synthesis of formicamycin H brought into question our original stereochemical assignment of the axially chiral linkage between C-6 and C-7. To address this, we obtained an X-ray crystal structure for formicamycin H that unambiguously confirmed our original assignment as the Sa atropisomer. X-ray structures for multiple additional fasamycins and formicamycins confirmed that this is common to all congeners. However, these studies identified a compounded error made by us whereby several structures previously reported as para-methoxy were found to have ortho-methoxy groups on the hanging E-ring. To address this for congeners that did not crystallize or gave nondiffracting crystals, we turned to the surprisingly underutilized 1,n-ADEQUATE NMR experiment. In total, we generated X-ray structures for 15 phenylnaphthacenoid metabolites and by combining these results report the corrected structures for three formicamycins, six fasamycins, and three biosynthetic lactone intermediates, noting that several revised fasamycin structures now match previously reported naphthacemycins. Our results highlight the utility of 1,n-ADEQUATE experiments for regiochemical determination in polysubstituted aromatic molecules. Moreover, our investigations uncovered a potential deracemization step during biosynthesis of the formicamycin framework.
pubs.acs.org
I’m looking for an automated way to read others’s scientific data without giving credit or acknowledgement, and also claim full credit for insights from it. And I want it to have a fitting name OAI: say no more
Introducing GPT-Rosalind, our frontier reasoning model built to support research across biology, drug discovery, and translational medicine. Video: https://twitter.com/openai/status/2044861690911850863
1. Dodgers 2. Whoever is playing the Giants. 3. Whoever is playing the Astros.
Should we all reintroduce our baseball allegiances for a quick refresher? No explanation. 1. Cardinals 2. Red Sox 3. Whoever is playing the Astros
Congratulations to David Delgadillo and Jacob Rothbaum on being awarded the inaugural Nemko Mentorship Prize! 🎉 https://beckmaninstitute.caltech.edu/funding-opportunities/beckman-institute-mentorship-prize
My quote of the day Science is the search for truth, that is the effort to understand the world: it involves the rejection of bias, of dogma, of revelation, but not the rejection of morality. Linus Pauling
For a quick summary @uclacb.bsky.social al for the nice writeup of our paper www.chemistry.ucla.edu/news/innovat...
Innovative proximity labeling platform illuminates how cholesterol interacts inside cells – UCLA
Cholesterol plays a central role in cell health, influencing membrane fluidity, curvature, and signaling. To maintain proper cholesterol levels, cells rely on tightly regulated transport systems that move cholesterol between membranes and organelles. However, many of the proteins involved in sensing, binding, and trafficking cholesterol—and how they dynamically interact—remain poorly understood.
chemistry.ucla.edu
“The enormous diversity of fungal genomes...offers catalogs of enzymes, secondary metabolites & other parts lists for biotechnology, bioenergy & biomaterials."—Igor Grigoriev, Fungal & Algal Program Head. 🖥️🧬🍄🍄🟫 https://jgi.doe.gov/user-science/science-stories/mapping-earths-hidden-fungal-kingdom
Mapping the Earth’s Hidden Fungal Kingdom | Joint Genome Institute
Leveraging massive comparative genomics to decode millions of mystery genes and lay a future-ready foundation
jgi.doe.gov
Multidisciplinary training, over time, produces the highest impact people www.science.org/doi/10.1126/...
Recent discoveries on the acquisition of the highest levels of human performance
Scientists have long debated the origins of exceptional human achievements. This literature review summarizes recent evidence from multiple domains on the acquisition of world-class performance. We re...
science.org
Once every 5 years, scientists all over the world gather in Hawaii for the International Chemical Congress of Pacific Basin Societies: cen.acs.org/acs-news/mee... #Pacifichem2025 #Pacifichem #chemsky 🧪
Because biology is so flexible, the genetic code is sometimes tweaked to add additional amino acids into select proteins. It turns out that some archaea, microorganisms distinct from bacteria and eukaryotes, have gone one step further. cen.acs.org/biological-c... #chemsky 🧪
These archaea built a distinct genetic code to put pyrrolysine in proteins
That feat has synthetic biologists excited
cen.acs.org
New in Science Magazine from the Doudna Lab and first author Owen Tuck: Recurrent acquisition of nuclease-protease pairs in antiviral immunity. Read here: https://ow.ly/pIWQ50XtEtM
Recurrent acquisition of nuclease-protease pairs in antiviral immunity
Antiviral immune systems diversify by integrating new genes into existing pathways, creating new mechanisms of viral resistance. We identified genes encoding a predicted nuclease paired with a trypsin-like protease repeatedly acquired by multiple, ...
ow.ly
[6+4] Cycloadditions! Introducing our first dive into this fascinating subject in a very enjoyable collaboration with Ken Houk and his team. Congrats to Harrison and Tufan! pubs.acs.org/doi/10.1021/...
Synthesis of Collinoketones via Biomimetic [6 + 4] Cycloaddition
Cycloadditions are among the most powerful reactions for constructing molecular complexity. The archetypal example is the [4 + 2] (Diels–Alder) cycloaddition, which efficiently furnishes cyclohexene d...
pubs.acs.org
@dmeremin.bsky.social Absolutely crushed it with this automated workflow! It ain’t about the size of your crystals, nor the way that they look, that matters…it’s all about how they diffract! Cheers to the whole team!
🚨Hot off the press @jacs.acspublications.org! Your TEM can now solve crystal structures on its own. Small molecules, materials, proteins—all with one platform: REyes, the first end-to-end autonomous electron diffraction suite doi.org/10.1021/jacs... @caltechcce.bsky.social @uclacb.bsky.social
Excited to share our latest @nature.com: How does naloxone (Narcan) stop an opioid overdose? We determined the first GDP-bound μ-opioid receptor–G protein structures and found naloxone traps a novel "latent” state, preventing GDP release and G protein activation.💊🧪 🧵👇 www.nature.com/articles/s41...
📢 New preprint: Experiment-guided AlphaFold3 resolves accurate protein ensembles. doi.org/10.1101/2025... AlphaFold3 is incredible, but has crucial limitations: it typically collapses to a single conformation, ignoring the inherent dynamics of proteins. And it can be wrong. Here's a solution. 🧵👇
‘Economics Nobel prize won by researchers who showed how science boosts growth’ by @philipcball.bsky.social in @nature.com www.nature.com/articles/d41...
Metabolic controls on the carbon isotope fractionations of bacterial fermentation www.pnas.org/doi/abs/10.1... #jcampubs
Metabolic controls on the carbon isotope fractionations of bacterial fermentation | PNAS
Microbial fermentation facilitates the initial breakdown of organic matter into small molecules and is thought to be the rate-limiting step of anox...
pnas.org
The 2025 #NobelPrize in Chemistry has been awarded to Susumu Kitagawa, Richard Robson and Omar M. Yaghi “for the development of metal–organic frameworks.” Stay tuned for the full story to come! cen.acs.org/people/nobel... #ChemNobel #Chem #Chemistry #chemsky 🧪
The 2025 chemistry Nobel goes to MOFs
Susumu Kitagawa, Richard Robson and Omar M. Yaghi win the prize for developing metal–organic frameworks
cen.acs.org
A new electron diffraction technique could make it easier to study molecules that need to remain solvated at all times.
New electron diffraction strategy could make it easier to study solvated organic microcrystals
The approach combines carbon liquid cells and rapid data acquisition to study solvated molecules at room temperature
chemistryworld.com
❄️ NEW PRE-PRINT ❄️ Happy to see our latest work online. Here we present a super simple solution to the preferred orientation problem in single particle cryo-EM: the use of ultrasonic excitation during vitrification! Details in the 🧵 below... #cryoEM #structuralbiology
Overcoming Preferred Orientation in Cryo-EM With Ultrasonic Excitation During Vitrification https://www.biorxiv.org/content/10.1101/2025.09.14.676144v1
is the dimer core of the H-cluster of FeFe hydrogenase formed by rSAM chemistry in HydE? pubs.acs.org/doi/full/10....
The Radical S-Adenosyl-l-methionine Enzyme HydE Forms an Fe(I)Fe(I) Dimer En Route to the [FeFe] Hydrogenase H-Cluster
[FeFe] hydrogenases are highly efficient metalloenzymes that catalyze hydrogen conversion via a sophisticated active site cofactor known as the H-cluster. Biosynthesis of its [2Fe]H subcluster, which ...
pubs.acs.org
ACS Council approves the petition to establish the Committee on the Advancement of LGBTQ+ Chemists, 86% to 14%. #chemsky 🧪⚗️ #acsfall2025
Scientists’ role in defending democracy www.science.org/doi/10.1126/... Let's all support this vital need: the ability to tell the truth. 💪 "Those in the science community who are willing & able to be more visible can step up. Acting together will be more impactful than going it alone."
Scientists’ role in defending democracy
The United States’ democratic leadership, commitment to freedom of expression, and investment in the pursuit of knowledge have long enabled its preeminence in science and technology. Yet today we are ...
science.org
#ChemSky #ACSFall2025 Huge thank you to Prof. Isaiah Speight, Prof. Kensha Clark, and Prof. Davita Watkins for organizing this amazing lineup of impressive speakers. Hosted by organicdivision.org POLY and INOR. Thank you to ACS President Dr. Phillips for elevating this to a Presidential Symposium