21 AUG — #ISME20 Day 5! 🦠 Today we're exploring antibiotic resistance, virus visualisation and a new reversible fixation method. Check out our presentations below! 🔬🌏
Alex Loy
@loyteam.bsky.social
Professor for Microbial Communities @dome-vienna.bsky.social @cemess.bsky.social University of Vienna @univie.ac.at 🇦🇹, studying the role of microbes 🦠 in environmental and human health, sulfur microbes & gut microbiome
New CoE Microplanet paper in Nature Communications! CoE Key Researcher Alexander Loy @loyteam.bsky.social @cemess.bsky.social @univie.ac.at contributed to a study reconstructing the evolutionary history of the Sox sulfur oxidation system. doi.org/10.1038/s414... @fwf-at.bsky.social
It's Friday, it's podcast time! In the 5th episode, “Sulfur metabolism-A balancing act”, we speak with CoE Key Researcher Alexander Loy @loyteam.bsky.social @cemess.bsky.social @univie.ac.at on how microbial sulfur compounds and gut gases like hydrogen sulfide shape our gut health. Link 👇
New @fwf-at.bsky.social CoE Microplanet paper! Alex Loy and team @loyteam.bsky.social @cemess.bsky.social @univie.ac.at and colleagues discovered a new group of iron-binding molecules, kineochelins, produced by an Antarctic bacterium. 📄 doi.org/10.1111/1751...
Celebrating excellent Austrian microbiome research with the awardees of this year’s Austrian Microbiome Research Awards!🏆 Congrats to Jakob Rauter, Julia Krasenbrink @cemess.bsky.social @univie.ac.at, and Goodness Osondu-Chuka @bokuvienna.bsky.social Details 👇
Congratatulations Julia! 🤩👊 Very proud of you 😊
Cluster of Excellence 'MicroPlanet'@microbesplanet.bsky.social · 2mo agoCelebrating excellent Austrian microbiome research with the awardees of this year’s Austrian Microbiome Research Awards!🏆 Congrats to Jakob Rauter, Julia Krasenbrink @cemess.bsky.social @univie.ac.at, and Goodness Osondu-Chuka @bokuvienna.bsky.social Details 👇
Joana Séneca, Petra Pjevac and David Berry from the Joint Microbiome Facility (JMF) and DOME | CeMESS contributed to a new study, led by scientists at Uniklinik RWTH Aachen, benchmarking a key method used to characterize the microbial contents of our digestive tracts. www.nature.com/articles/s41...
Benchmarking of shotgun sequencing depth reveals the potential and limitations of shallow metagenomics and strain-level analysis - Nature Microbiology
A comparison of sequencing of complex mock communities performed at multiple depths and analysed using different methods establishes minimum standards that can ensure the accuracy of metagenomic analy...
nature.com
Can rainforests buffer rising CO₂ levels? 🌳🌍A new study by an international team, co-lead by Lucia Fuchslueger (@loutsi.bsky.social TER | CeMESS), reveals that the tradeoff comes at a cost. Learn more 🔗 cemess.univie.ac.at/news-detail/... @natcomms.nature.com #AmazonRainforest
Amazon understory forests show short-term boost in CO₂ uptake – but this comes at a cost
Experimental increases in CO2 stimulated plant growth are facilitated by re-distributed root systems to extract nutrient resources more efficiently
cemess.univie.ac.at
New from DOME | CeMESS: Mondsee & Attersee show elevated methane in surface waters year round – evidence of the #MethaneParadox and a continuous source to the atmosphere, says study lead Barbarba Bayer (@barbarabayer.bsky.social) Learn more 🔗 cemess.univie.ac.at/news-detail/...
New Study: Methane is present in surface waters of Mondsee and Attersee – why is it there and why should we care?
A new study from the research group of Barbara Bayer at DOME | CeMESS discovered that the two Austrian lakes Mondsee and Attersee are a source of methane throughout the year. The study was recently pu...
cemess.univie.ac.at
Now out in @nature.com by @polzlab.bsky.social Read more about the study here: 🔗 cemess.univie.ac.at/news-detail/...
Evolutionary processes shape bacterial populations in the human gut
In addition to diet and medication, transmission between people can also play an important role in the microbiome
cemess.univie.ac.at
Martin Polz@polzlab.bsky.social · 5mo agoVery excited to share our new paper out in Nature. Congrats to Xiaoqian (Annie) Yu and all the coauthors. www.nature.com/articles/s41...
New in @isme-microbes.bsky.social: 🦠 Endochlamydia hydrae – the first cultured member of a chlamydial lineage, previously known only from metagenome-assembled genomes – thrives as a symbiont of freshwater cnidarian Hydra. 🔗 Read the paper: academic.oup.com/ismej/advanc...
Stable association of a chlamydial symbiont with the freshwater predator Hydra suggests broad host potential
Abstract. Symbiotic associations between microorganisms often involve eukaryotes partnering with microbes for nutrient exchange, protection, and resource a
academic.oup.com
New preprint👇 Global evolutionary pattern and distinct metabolic strategies of sulfur-cycling microorganisms across ecosystems Also introducing DiSuCy - a curated, phylogeny-aware knowledgebase of dissimilatory sulfur metabolism genes #microsky #microbiomesky 🧫 🦠 doi.org/10.21203/rs....
Global evolutionary pattern and distinct metabolic strategies of sulfur-cycling microorganisms across ecosystems
Microorganisms drive the global sulfur cycle, but the complexity of sulfur redox transformations complicates understanding of their evolution, metabolism, and ecology. We developed DiSuCy, a manually ...
doi.org
New Paper 👇 Evolutionary trajectory of microbial sulfur oxidation pathways recapitulates Earth’s oxygenation history #microsky 🧫🦠 #microbiomesky www.nature.com/articles/s41...
Evolutionary trajectory of microbial sulfur oxidation pathways recapitulates Earth’s oxygenation history - Nature Communications
Microorganisms have long driven Earth’s oxidative sulfuric cycle using complex sulfur-oxidizing systems. This study shows that this molecular machinery first originated in the anoxic Archean eon and g...
nature.com
New @fwf-at.bsky.social CoE Microplanet study in ISME Journal! CoE Key Researcher Alex Loy and team @loyteam.bsky.social @cemess.bsky.social @univie.ac.at find rumen bacteria that degrade a plant- and algal-derived sulfosugar, might help limit methane production. doi.org/10.1093/isme...
New paper out in Nature Comms 🎉 Congrats to first author @sekid.bsky.social & thanks team & collaborators We show that B. bifidum & E. coli can cooperate in the breastfed infant gut through nutrient cross-feeding, helping shape early-life microbiome development 🦠👶 www.nature.com/articles/s41...
Human milk oligosaccharide mediates mutualism between Escherichia coli and Bifidobacterium bifidum - Nature Communications
Escherichia coli is widespread in healthy breastfed infants, yet its ecological role is unclear. Here, the authors provide insights into the mechanisms supporting its persistence and co-existence with...
nature.com
New paper from @loyteam.bsky.social out in The @isme-microbes.bsky.social Journal: "Sulfoquinovose degradation by cow rumen microbiota" Want to know more? 🔗 cemess.univie.ac.at/news-detail/...
New paper: Degradation of a green-fodder-derived sulfosugar by cow rumen bacteria
Rumen microbiota are essential for cattle husbandry, providing energy and protein through fermentation. However, this symbiotic process also produces methane as a byproduct, representing both a loss of feed energy for the animal and a major source of greenhouse gas emissions. A new study now uncovers the identity and metabolism of rumen bacteria that degrade a ubiquitous plant- and algae-derived sulfosugar, revealing a previously unrecognized process that may help limit methane production.
cemess.univie.ac.at
Alex Loy@loyteam.bsky.social · 6mo ago📢 New paper 🚨 ☘️🌿🌱🐄💨🦠🔬🧫🧬 #sulfoquinovose #microbiome #microsky #microbiomesky academic.oup.com/ismej/articl...
📢 New paper 🚨 ☘️🌿🌱🐄💨🦠🔬🧫🧬 #sulfoquinovose #microbiome #microsky #microbiomesky academic.oup.com/ismej/articl...
Sulfoquinovose degradation by cow rumen microbiota
Abstract. Sulfoquinovose, a sulfonated sugar derived from the thylakoid membrane lipid sulfoquinovosyl diacylglycerol, is abundant in photosynthetic organi
academic.oup.com
Two weeks left to apply for our Master’s Programme “Microbiome Science” at @cemess.bsky.social | @univie.ac.at! Explore microbial communities shaping health, the environment, and ecosystems. Application Deadline: April 7 All Details: studieren.univie.ac.at/en/degree-pr...
Excited to announce our new journal from @isme-microbes.bsky.social ISME Host Microbe is live and now accepting submissions. Look forward to receiving your papers! #Microsky 🧫 🦠
By characterizing the structure and function of a methylthio-alkane reductase system, researchers could open avenues for using bacteria to produce ethylene and more. 🖥️ 🧬 Full story: https://jgi.doe.gov/user-science/science-stories/enzyme-system-help-catalyze-bioproduction-plastic
An Enzyme System to Help Catalyze Bioproduction of Plastic | Joint Genome Institute
By characterizing the structure and function of a methylthio-alkane reductase system, researchers could open avenues for using bacteria to produce ethylene and more.
jgi.doe.gov
Long in the making, great to see the study on line at @femsmicro.org A novel North Sea ammonia-oxidizing archaeon Nitrosarchaeum marinum leverages a high abundance of transport systems to grow over a wide salinity range. #microbiology @ribesresearch.bsky.social academic.oup.com/femsec/artic...
A novel North Sea ammonia-oxidizing archaeon Nitrosarchaeum marinum leverages a high abundance of transport systems to grow over a wide salinity range
Isolation and characterization of a novel North Sea ammonia oxidizing archaeon, Nitrosarchaeum marinum T12, reveals an adaptation to a broad salinity under
academic.oup.com
Our new preprint introduces #kineochelins, a new group of #siderophores produced by the Antarctic soil actinomycete 🦠🔬🧫 #Actinokineospora sp. UV203 Kudos to the amazing Stanislava Králová & a fantastic team of collaborators 🤩 #microbiomesky www.biorxiv.org/content/10.6...
biorxiv.org
Kineochelins - a novel group of siderophores from an Antarctic bacterium www.biorxiv.org/content/10.6... #jcampubs
Our latest. Led by the very talented @ahoiching.bsky.social Cell cycle dysregulation of globally important SAR11 bacteria resulting from environmental perturbation www.nature.com/articles/s41... #jcampubs 🌊
Cell cycle dysregulation of globally important SAR11 bacteria resulting from environmental perturbation - Nature Microbiology
Without key cell cycle control genes, SAR11 cells experience aneuploidy and growth inhibition when exposed to changes in nutrients, carbon sources or temperature stress, a vulnerability that may repre...
nature.com
🥁 NEW Our study on infant gut microbiome and #straintransmission is now published in @nature.com: doi.org/10.1038/s415... 1/10
Baby-to-baby strain transmission shapes the developing gut microbiome - Nature
A metagenomic survey of babies attending the first year of nursery detected extensive baby-to-baby microbial strain transmission, pointing to social interactions in infancy as crucial drivers of infan...
doi.org
PhD studentships available through our BBSRC-funded doctoral programme. 🦠🧫💻 Contact me if you're interested in using bioinformatics/lab-based approaches with cultivated and uncultivated bacteria of the human microbiome, to identify and characterize novel enzymes with potential biotech applications.
Biotechnology and Biological Sciences Doctoral Training Programme - The University of Nottingham
nottingham.ac.uk
New paper out in Current Opinion in Microbiology: MCR-encoding (potentially methanogenic) Thermoproteota are widespread and transcriptionally active in diverse anoxic ecosystems! @dr-zj.bsky.social, Matthew Kellom & @emileyeloe-fadrosh.bsky.social. Funded by DOE BER program. tinyurl.com/2fsyxswj 🦠🧪
