Filip Husnik

@filiphusnik.bsky.social

Associate Professor at the Okinawa Institute of Science and Technology (OIST) 🇯🇵 previously 🇨🇦🇺🇸🇨🇿 evolution | cell biology | symbiosis | genomics | microbiology | marine science https://www.oist.jp/research/research-units/ecbsu/

Can't wait to release a 10-year-old birthday version for SeqKit! - 10 years - 2 papers, 3500 citations - 20 contributors - 40 subcommands - 880 commits - 500 issues - 685.5K Bioconda total downloads Thank you all, dear contributors and users! I'll keep maintaining it. github.com/shenwei356/s...

Release SeqKit v2.13.0 (10-year-old birthday version) · shenwei356/seqkit

Changelog SeqKit is 10 years old! SeqKit v2.13.0 - 2026-02-28 seqkit: add support for reading and writing LZ4 compression format. new command: seqkit sample2: improved seqkit sample by @stahiga....

github.com

I've seen fossils in some remarkable places, but this takes the prize: the benthic foram Nummulites in the base of the Great Pyramid of Giza. These massive blocks were quarried from the Eocene Mokkatam Formation when a relictual population of woolly mammoths still lived on Wrangel Island.

Disc-shaped fossils with concentric grooves scattered through a limestone block.Image of the apex of the Great Pyramid, taken from the base of the southeast corner. The layers of massive blocks of limestone composing the pyramid are clearly visible. The pyramid is set against a sunny blue sky.

Those interested in performing maximum likelihood phylogenomic analysis on data sets made up of eukaryotic nuclear genes using site heterogeneous mixture models like C60, I suggest you use the ELM model in IQ-TREE instead of the LG model /1

New #microbiome paper from our lab @ioes-ju.bsky.social! Unexpected host associations for Bartonellaceae - a bacterial family primarily known as mammalian pathogens. Striking #symbiont evolutionary trajectories, exemplified by a highly reduced, 158kb genome with no nutrient biosynthetic capacity!

Genome Biology and Evolution@genomebiolevol.bsky.social · 9mo ago

Ma, @annamichalik.bsky.social, Deng, Hu & @sympiotr.bsky.social discover the presence of Bartonellaceae bacteria in planthoppers, broadening the host spectrum of nonpathogenic Bartonellaceae. 🔗 doi.org/10.1093/gbe/evaf216 #genome #evolution