Note on using Gemini Pro for paper references: First, it hallucinated on the year and journal, making it up for a preprint paper. Second: it got wrong the order of authorship for a second paper with the same team, repeating the order of the first paper. Folks, review your AI results.
Flávia E. Rius
@flaviaerius.bsky.social
Data scientist interested in polygenic risk scores, cancer, and a few unrelated things. #rstats #bioinformatics https://flaviaerius.com
I recently discovered Conventional Comments (conventionalcomments.org) for providing a pseudo-standard set of labels for feedback and just tried it for an article review and it was really helpful to specify issues vs. thoughts vs. suggestions, etc. Hopefully it's helpful for the authors too!
As a previous co-organizer for R-Ladies Seattle, I know how long a little help can go. That’s why I’m so excited that Posit is supporting community conferences and local meetups! Please share this with an organizer who wants to feed folks some pizza while learning about data science tools 🍕
Organizing a community data science event or workshop? Posit wants to help! If you need event funding, awesome swag, social media signal boosts, or guest speakers/mentors, please reach out. Learn more: opensource.posit.co/about/commun...
Come join me for a all new slidecrafting workshop! 2 hours of all new content, teaching you to go from zero to hero in quarto slides! It is free and open to anyone, very minimal quarto knowledge required, we are starting with the basics! pos.it/slide-wrkshp #quarto #slidecrafting
Slidecrafting Workshop with Emil Hvitfeldt
This will be a 2-hour workshop (with a short break) led by Emil Hvitfeldt all about making great slides in Quarto! Wed, Aug 12, 2026 12:00 PM EDT
pos.it
10 colour palettes I reach for in research charts — curated, and most are colourblind-safe. Categorical + sequential: Okabe-Ito, Paul Tol, Tableau 10, viridis, cividis, magma. Skip default tab10 and rainbow/jet. Which do you swear by? Anything I'm missing? #DataViz #ColorPalette #SciComm
I love that #rstats introduced me to some social sciences and economics people. The studies I come across by because of this are quite interesting! I would never see any of this in my biomedical sciences bubble.
Science Bluesky is now much better than Science Twitter is… but I still miss peak pre-pandemic Science Twitter.
Bluesky is the new science Twitter, new study by @whysharksmatter.bsky.social and Julia Wester concludes! "Results show that for every reported professional benefit that scientists once gained from Twitter, scientists can now gain that benefit more effectively on Bluesky than on Twitter."
This benckmark does not express how better Claude Code is than the other models on top. Apparently, the reasoning of Opus 4.6 being better makes all the difference. (I've tested it for some bioinformatics data analysis in the last hour and the difference is brutal, even Sonnet vs. Gemini-any).
There is a subtle difference in transforming a vector into a file using writeLines() or write.table(col_names = F, row.names=F): the latter allows quotes in the output. It makes a lot of difference for file paths, for example. #rstats
R/Medicine conf is so good. I'm not in medicine, and it doesn't matter. It's always great!! #rstats
Contribute your knowledge and your voice! The R/Medicine 2026 Call for Proposals closes tomorrow, March 13. Submit your talk, lightning talk, demo, or workshop! rconsortium.github.io/RMedicine_we... #rstats #opensource #publichealth #healthdata
OMG the proportion this post took. This is NOT a hateful post for tidyverse. I love tidyverse! It is only a person pov while doing more stuff with python pandas*. As @nrennie.bsky.social pointed out, polars is more similar to the tidyverse.
It is much easier to understand python code for data science if you know a bit of base R than if you only know tidyverse. #rstats #python
English version now available luisdva.github.io/rstats/RRstu...
R is not RStudio
and that’s OK
luisdva.github.io
R (el lenguaje de código abierto) y RStudio (el IDE de Posit) son cosas distintas, pero en muchos países de habla hispana usamos los términos indistintamente. Escribí sobre este fenómeno lingüistico/cultural, considerando la adopción (o no) de Positron luisdva.github.io/rstats/RRstu... #rstats
Using quarto with python is a whole new experience. It is *not* a simple switch of languages (if you're an R user like me).
We also have a separate programme for the Global South. If your idea is selected, we will bring the event to your region. #BiologistsWorkshops Details: www.biologists.com/workshops/pr...
Is there any buzzfeed-like quiz out there yet to figure out which AI model is the best for you? It would be fun.
Guys, you need to come up with a better strategy of getting rid of robots. I lose half of my day recognizing buses, bikes and stairs.
Creating a package to organize my work, instead of just reloading functions from scripts, was the best thing I did so far this year. #rstats
2 weeks left to take the stage at posit::conf(2026)! 🎤 Share your work on R, Python, open-source, or any topic the community would love. Can't make it to Houston? Apply for our virtual track! It’s a great way to reach the global community. Apply here: posit.co/blog/posit-c... #positconf2026 #rstats
The Shingles vaccine and reduction of dementia: a new natural experiment from Canada replicated 3 others and adds to this week's link to slowing of biological aging. erictopol.substack.com/p/spotlight-...
Spotlight on the Shingles Vaccine—Again!
Two new studies add to a remarkable body of evidence for benefit
erictopol.substack.com
If you are using independent training and testing sets which need PCA calculation in genomics, be sure to do it using projection and to the same panel, alongside the same parameters (maf, ld and missingness). Otherwise, you are comparing bananas to apples. #genomics #bioinformatics
Speak at posit::conf(2026) and share your R & Python stories! Accepted speakers get: ✨ Travel & lodging help ✨ Free conference pass ✨ Professional coaching Apply by Feb 6 to join us Sept 14-16 in Houston, TX! Submit here: pos.it/conf-talk-2026 #positconf2026 #rstats #pydata
3 things I learned from @stephenturner.us workshop on #R pkg development in #Positron - there is a light bulb icon that creates a roxygen template for an R file - available::available("pkgname") checks if the name you want has already been used - {pkgndep} evaluates heaviness of pkg dependencies
I use a gist everytime I need to run a few basic #bioinformatics explorations in a new instance, and thought I could share it here so someone could benefit from it too! I have forked it and adapted a bit to my needs. Here it goes: gist.github.com/flaviaerius/...
Install samtools, bcftools and htslib on linux
Install samtools, bcftools and htslib on linux. GitHub Gist: instantly share code, notes, and snippets.
gist.github.com
I won't miss this one!
❗️Our next workshop will be on Jan 15 , 6 pm CET titled R package development in Positron by @stephenturner.us Register or sponsor a student by donating to support Ukraine! Details: bit.ly/3wBeY4S Please share! #AcademicSky #EconSky #RStats