Hannah Heil
@hannah-superres.bsky.social
Microscopy enthusiast @NordenfeltLab @LundUniversity : #SuperResolution #SMLM #OpticalCellBiology #femalewithmicroscope All tweets represent my independent views🤓
Last day of the Strathclyde Optical Microscopy Course & during @hannah-superres.bsky.social’s seminar on Smart Microscopy, one slide advised that we & AI should all aspire to imaging as well as @christlet.bsky.social. Or perhaps encode his brain into AI? Either way that’s the bar been set ….
📣 Tracking cells through time – including divisions – is a core problem in live-imaging microscopy. We built HOCT, an edge-centric Transformer that hits state-of-the-art on the Cell Tracking Challenge without a pretrained image encoder. Work led by @jookuma.bsky.social arxiv.org/abs/2607.11754 🧪🔬💻
📍Arrived in Finland🇫🇮 together with @henriqueslab.bsky.social for the @sigridjuselius.bsky.social symposium AI Transforming Life Sciences and Medicine🤖💻🧬🩺 What an honour to share the program with the best! 👾🔬🌈🧫 ... and a true excitement to do it as a PI at #NIMSB for the 1st time!💙
🔬 Happy to share our new paper showing that fluorophore brightness open a new dimension in SMLM microscopy ! Thanks to all authors @laurent-le.bsky.social S. K. Sreenivas @emmanuelfort.bsky.social ! @ismolab.bsky.social @instlangevin.bsky.social @cnrs.fr rdcu.be/fmIeD doi.org/10.1038/s415...
🔬🚀 It's out! Run 100s of imaging experiments before touching a microscope. #VLab4Mic reproduces them in silico from PDB/AlphaFold to help you image right first time. From rockstars Damián Martínez & Bruno Saraiva, inaugural preprint of @mariodelr.bsky.social new lab www.biorxiv.org/content/10.6...
Mario Del Rosario@mariodelr.bsky.social · 2mo agoCongratulations to Damián Martinez, Bruno Saraiva, @taylashakespeare.bsky.social, @wmarkbates.bsky.social, Dylan Owen, @christlet.bsky.social and @henriqueslab.bsky.social We hope VLab4Mic helps researchers design better experiments and ask better biological questions 💻 vlab4mic.henriqueslab.org
🚨Our #NIMSB PhD fellowship call closes on Friday! We're recruiting for 5 fantastic PhD projects + welcome applicants from diverse backgrounds: #biologists #computerscientists #physicists #engineers If you want to work on cutting-edge science, we'd love to hear from you 🚀 👉https://sl1nk.com/vog901g
Estibaliz Gómez de Mariscal, PhD@gomez-mariscal.bsky.social · 3mo agoWant to do a PhD in biomedical research and explore the exciting world of AI, microscopy and cell biology?👾🧠🧫🔬 In a research environment of high excellence🌟 and in beautiful Portugal🏄🌸? PhD fellowships are now open at #NIMSB from May-4 til June-5 👉 APPLY lnkd.in/eqkYreFi Reach out if interested!✉️
🚨 Job Alert 🚨 In the Scientific AI Flagship @humantechnopole.bsky.social, with Philipp @3p1l.bsky.social Erdmann we are looking for: shorturl.at/Biavu "...experience in ML and CV... reliable software systems that interact with [the] real-world..." Look at the position and apply! Repost please! 🙏
Postdoc Erdmann Lab - Flagship Research Program Scientific AI
Postdoc Erdmann Lab - Flagship Research Program Scientific AI
careers.humantechnopole.it
📰 News item on #MicroSplit: 🔬https://humantechnopole.it/en/news/when-less-is-more-optimising-fluorescence-microscopy-with-micro𝕊plit/ Thanks a lot @humantechnopole.bsky.social, it was such a fun co-writing experience! 🙏
When less is more: optimising fluorescence microscopy with Micro𝕊plit - Human Technopole
Researchers at Human Technopole have developed a novel machine learning-based method that transforms composite fluorescence microscopy images with overlapping signals into separate images revealing in...
humantechnopole.it
I was interviewed by @snehakhedkar.bsky.social for The Scientist about our work using super-resolution microscopy to map the neuronal architecture, and make nice pictures along the way! Check the article here: www.the-scientist.com/super-resolu...
Super-Resolution Microscopy Helps Map Hidden Neuronal Architecture | The Scientist
Christophe Leterrier uses advanced microscopy to uncover neurons’ intricate nanostructure and dynamics while creating striking images that bring brain science to life.
the-scientist.com
Super excited to share a project I’ve worked on since my Master’s thesis, what a journey!🚵 Finally out as a Nature Methods Stage 1 Registered Report preprint doi.org/10.6084/m9.f... We benchmark deep learning-based single-image super-resolution methods for microscopy imaging. Interested? Check out 🧵
Accuracy versus Perception: a Benchmark of Deep Learning Models for Single-Image Super-Resolution in Microscopy
Virtual super-resolution deep learning methods provide a powerful solution to overcome the physical and temporal constraints of microscopy imaging. Yet, assessing and choosing an ideal methodological strategy complicates their use in life sciences and creates a lack of trust in these methods. Here we propose an objective comparison of nine popular single-image super-resolution (SISR) models in a collection of publicly available microscopy datasets, including cell components like microtubules, endoplasmic reticulum, and actin, using confocal microscopy, SEM, SIM, SMLM and STED microscopy modalities for fixed and live-cell microscopy data. The proposed models will be assessed quantitatively with a collection of metrics in microscopy and computer vision, and qualitatively by experts in the field. The proposed models will be made accessible through open, user-friendly, containerised notebooks. This systematic assessment of SISR approaches will provide a more comprehensive understanding of these methods' performance and contribute to standardising SISR methods in microscopy.
doi.org
Memories of when a song could spark a revolution.
a man is looking at a calendar that says abril
ALT: a man is looking at a calendar that says abril
media.tenor.com
Want to do a PhD in biomedical research and explore the exciting world of AI, microscopy and cell biology?👾🧠🧫🔬 In a research environment of high excellence🌟 and in beautiful Portugal🏄🌸? PhD fellowships are now open at #NIMSB from May-4 til June-5 👉 APPLY lnkd.in/eqkYreFi Reach out if interested!✉️
And then we brutally modified microfluidics and microscopes until 23.00….. spot @iamchagas.bsky.social in the pictures
Second day at the @embo.org course hack your microscope. Today the teams will start approaching the challenges: organoids separation in flow, and live/dead automatic staining. The place is amazing and the course fantastic. @itqbnova.bsky.social
Day 3. I would love to wake up, go for a walk near the sea and then go to work… This is so relaxing
Day 4. My morning walks before the trainings are amazing
On day 4 we had @hannah-superres.bsky.social showing beautiful super resolved pictures, and a vegetarian lunch from plants used for research.
#Mifobio2025 Focus on the module 3 : 👉 Analysis, simulation and modelling : a new paradigm with AI ? We are delighted to welcome @flc-lab.bsky.social @ulaval.ca Lecture : “Decoding synaptic diversity with AI-assisted nanoscopy” 👉 imabio-cnrs.fr/mifobio-2025/ #GDRImaBio #microscopy #nanoscopy
🔬 #Mifobio2025 Flavie LAVOIE-CARDINAL's lecture is online ! 🎤 Decoding synaptic diversity with AI-assisted nanoscopy 📹 👉 youtu.be/dRWEcaO77uI @flc-lab.bsky.social @ulaval.ca @cnrs.fr @cnrsbiologie.bsky.social @cnrsingenierie.bsky.social @gdr-imabio-ysn.bsky.social #nanoscopy #synaptic #ai
Flavie LAVOIE-CARDINAL : decoding synaptic diversity with AI-assisted nanoscopy
YouTube video by GDR Imabio - CNRS
youtu.be
GdR ImaBio 🔬@gdrimabio.bsky.social · 10mo ago#Mifobio2025 Focus on the module 3 : 👉 Analysis, simulation and modelling : a new paradigm with AI ? We are delighted to welcome @flc-lab.bsky.social @ulaval.ca Lecture : “Decoding synaptic diversity with AI-assisted nanoscopy” 👉 imabio-cnrs.fr/mifobio-2025/ #GDRImaBio #microscopy #nanoscopy
A great start of the #EMBO Practical Course – Hack Your Microscope 🔬 #EMBOmicroscope @itqbnova.bsky.social with inspiring talks by Richard Bowman on "The @openflexure.bsky.social Experience" and @henriqueslab.bsky.social on "Open-technology, artificial intelligence, live-cell super-resolution"
Good morning 🌺! Bright start into the Hack your Microscope #EMBOmicroscope practical course! Looking forward to a week of tinkering! @itqbnova.bsky.social
1/ 🔬🧑💻 Tired of going back and forth between GUIs and code for your 3D image analysis needs? Would you like to keep your focus in one place (notebook), without sacrificing interactivity? Here’s a tool that can help!
Out in @natmethods.nature.com: More dyes. They work. Quite well. And blink. Pick the one that fits your target, your technique, and your labeling density. With too many collaborators and institutes to list, but anchored at @hhmijanelia.bsky.social www.nature.com/articles/s41...
A series of spontaneously blinking dyes for super-resolution microscopy - Nature Methods
A series of spontaneously blinking dyes in the far-red range facilitate single-molecule localization microscopy. These dyes vary in their blinking properties and can be matched to the applications and...
nature.com
🐍 Learn Python for Image Analysis — for free! UK life scientists: join EuroBioImaging's hands-on beginner course at The Crick in London (23–25 June), running simultaneously with sites in CZ, PT and SWE! ⏰ Register by 15 April — places are limited! ✈️ Travel funding may be available shorturl.at/v3Vsk
📣 Registration is now open | 5th Bridging Nordic Microscopy Infrastructure Symposium 📍 Levi Summit & Hotel Panorama, Levi, Finland 🇫🇮 📅 23/24–27.11.2026 ⏳Early bird registration DL 17.07.2026 📜Abstract submission DL 1.07.2026 🔗 More info eurobioimaging.fi/FiAM/bnmi2026/
Are the cells alright? 🧫🔬🤒@mariodelr.bsky.social is presenting #PhotoFiTT at #FOM2026, a tool to assess phototoxicity ☠️ in you fluorescence microscopy assay developed @HenriquesLab. doi.org/10.1038/s414...
