Daniel Kerschensteiner

@kerschensteiner.bsky.social

Prof @ Washington University in St. Louis. To understand, preserve, and restore vision. https://kerschensteinerlab.wustl.edu/

The latest result from a fun ongoing collaboration! @mbeyeler.bsky.social @michaelgoard.bsky.social @spencerlaveresmith.bsky.social

Spencer LaVere Smith@spencerlaveresmith.bsky.social · 3w ago

Ecological Visual Processing in the Mouse - with @michaelgoard.bsky.social @crisniell.bsky.social @mbeyeler.bsky.social Visual computations that are engaged in ecological contexts: active sensing, motion processing, scene analysis, distance estimation, and spatial perception. doi.org/10.1146/annu...

New preprint from the lab! Most mammals have a secondary olfactory system (accessory olfactory system, a.k.a. vomeronasal system) that provides extra information about social cues that aren't airborne. This system is especially sensitive to "messy things" (saliva🤤, tears😿, urine🚾, feces💩) (1/n)

Bile acid chemosensation in mammals supports species and gut microbiome evaluation

The rodent accessory olfactory system (AOS) detects chemosignals emitted by conspecifics and other species to support beneficial behaviors. Peripheral vomeronasal sensory neurons (VSNs), the AOS' chemical sensors, detect fecal bile acids in patterns that have unknown significance to the animal. We used a combination of mass spectrometry and VSN calcium imaging to investigate the AOS' capacity to use bile acid information to discriminate between fecal samples from captive reptiles and mice with varying gut microbiome states. Mass spectrometry analysis revealed bile acid patterns that distinguished biologically relevant samples from one another, representing theoretical discrimination axes. We measured VSN response patterns to bile acid stimuli aligned with theoretical discrimination axes. We found that VSNs perform stimulus "whitening" via an inverse relationship between natural bile acid abundance and population response magnitude. VSNs showed maximum sensitivity to taurine-conjugated bile acids, which have high theoretical discriminatory value, but were found at low natural abundance levels. Individual taurine-conjugated bile acids drove threat assessment behavior when added to familiar mouse fecal extracts, suggesting high behavioral significance. Finally, we analyzed the degree to which the AOS utilizes the theoretical information about species, diet, and gut microbiome status from bile acids. We found that VSN tuning patterns align with theoretical axes for discriminating reptilian predators from vegetarians, and between mice with different gut microbiome states. VSN tuning was especially well-aligned with the information available about conspecific gut microbiome status. These results show that AOS bile acid chemosensation supports discrimination of multiple biologically relevant states. ### Competing Interest Statement The authors have declared no competing interest. National Institutes of Health, R01DC017985, R56DC015784, R01DC021213

biorxiv.org

We’re hiring! Join the Sivyer Lab at The University of Sydney as a Postdoctoral Research Fellow in Neurodegeneration within the Snow Vision Accelerator, a $50M initiative tackling glaucoma and optic nerve disease. iPSCs, electrophysiology, drug discovery, and gene therapy.

Bild

Our work on the TET enzymes in retinal development is out. We identified that rod fate is inhibited when DNA demethylation is prevented by removal of the TET enzymes. Interestingly, photoreceptor numbers are normal. We utilized WGBS and bACE-seq to profile the precise localization of 5mC and 5hmC,…

PLOS Biology@plosbiology.org · last yr.

TET enzymes remove #DNAmethylation markers; @ismaelhdeznunez.bsky.social @clark-lab-retina.bsky.social &co show that these enzymes are required for #photoreceptor cells to initiate the genetic program to become rods instead of cones, & for maturation of the #retina @plosbiology.org 🧪 plos.io/3UaVBfl

Left: The active DNA methylation cycle. (i) 5mC is added by DNMTs. (ii) The TET enzymes oxidize 5mC to 5hmC. (iii) 5hmC is converted to 5fC and 5caC by the TET enzymes, followed by conversion back to cytosine by TDG and the base-excision repair pathway. (iv) Alternatively, APOBEC converts 5mC to thymine, causing DNA mismatch. Right: H&E staining of an allelic series of TET conditional P21 mutants.

New paper on bioRxiv: "Ambient Light Impacts Innate Behaviors of New-World and Old-World Mice" - together with @farrowlab.bsky.social, with data from NERF master students and two of my lab members! A study across 3 species: Mus musculus, Peromyscus maniculatus & P. polionotus doi.org/10.1101/2025...

Ambient Light Impacts Innate Behaviors of New-World and Old-World Mice

Animals encounter predators and prey under diverse lighting conditions that signal different risks and opportunities, yet how ambient illumination shapes innate approach and avoidance behaviors remain...

doi.org

Our proposal for a ‘universal’ nomenclature for rod and cone types based on their evolutionary lineages that will equally apply to all vertebrate species is now out! Have a look and please consider adopting the system :)

Bild
PLOS Biology@plosbiology.org · last yr.

In this #PLOSBiology Consensus View, @neurofishh.bsky.social @corbolab.bsky.social &co propose a new, consolidated, pan-vertebrate naming system for the rod and cone photoreceptors of the eye. 🧪 plos.io/4m4QcTC

I know there's a 𝒍𝒐𝒕 going on right now, but I couldn’t be prouder to share this long-incubated labor of love: the complete connectome of the male 𝐷𝑟𝑜𝑠𝑜𝑝ℎ𝑖𝑙𝑎 optic lobe 🧠🪰 🔗 www.nature.com/articles/s41...

Connectome-driven neural inventory of a complete visual system - Nature

A connectome of the right optic lobe from a male fruitfly is presented together with an extensive collection of genetic drivers matched to a comprehensive neuron-type catalogue.

nature.com

How natural stimuli lead to highly correlated ganglion cell activity in primate (marmoset) and mouse retina. Now out in @natureportfolio.bsky.social. And, I guess, great opportunity for a first post on this site. #FirstSkeet Very brief summary in this thread. 1/ www.nature.com/articles/s41...

Nonlinear receptive fields evoke redundant retinal coding of natural scenes - Nature

Species-specific gaze shifts with natural stimuli drive correlated spiking in retinal ganglion cells.

nature.com