I've made a video about Fig_Space, the next version of FigureJ. It has nice new features, I hope you like it. youtu.be/bTKcXN4p-JM
FigSpace Fiji plugin demo
YouTube video by jerome mutterer
youtu.be
Peter Sobolewski
@psobolewskiphd.bsky.social
#Duke #UCSD Alum; Recovering Academic; Research IT @jacksonlab.bsky.social; core dev @napari.fosstodon.org.ap.brid.gy
I've made a video about Fig_Space, the next version of FigureJ. It has nice new features, I hope you like it. youtu.be/bTKcXN4p-JM
FigSpace Fiji plugin demo
YouTube video by jerome mutterer
youtu.be
🚨🚨🚨 napari 0.9.0 is out! 🚨🚨🚨 This is a huge release for us and for our community, with over 30 people contributing new features, improvements, and bug fixes in the 6 weeks since 0.8.0! Release notes here: napari.org/stable/relea... and some highlights in the thread below! 👇
napari 0.9.0
Tue, Aug 25, 2026 We’re happy to announce the release of napari 0.9.0! napari is a fast, interactive, multi-dimensional image viewer for Python. It’s designed for browsing, annotating, and analyzing l...
napari.org
CEP 48, which brings conditionals and extras to your @conda.org dependencies, is now accepted! This means you will soon be able to type things like `typing-extensions[when='python<=3.10']` and `scipy[extras=test]` 🚀 github.com/conda/ceps/b...
github.com
Marlins Jumbotron Displays Message Saying Free Trial Of ABS System Has Ended
Come check out cool demos with @marimo.io (reactive Python notebooks!) I’ll be doing a small demo at the next community call aug 25 on spatial omics. deets: luma.com/13c69h7x I'm also a new marimo ambassador! do reach out for event collabs in San Diego or Boston👋
marimo Community Call! · Luma
Hear directly from the developers of marimo at our Q3 community call! We'll share out some exciting new updates (hint: marimoHub 👀), as well as introduce you…
luma.com
pixi 0.76 can now run standalone python scripts in isolated, on-demand environments. dependencies live inline via PEP 723, like uv supports, but pixi can layer on conda and system dependencies too. fun to build this with @prefix.dev folks. coming to a @marimo.io notebook near you SOON.
2 more days to submit an abstract to the QBI Multiplexing conference! Come to beautiful San Diego to discuss all things multiplex immunofluorescence. Registration is still open for those who want to attend but not speak.
There is still time to register for the QBI Multiplex Image Analysis and Computational Pathology workshop! Details below.
New preprint! How does a cell "know" how big to make its nucleus? This has puzzled biologists since the 1800’s. We show the answer is physics: colloid osmotic pressure. 🧵1/5
Nuclear size and physical properties of the nucleoplasm are determined by colloid osmotic pressure at the nuclear envelope https://www.biorxiv.org/content/10.64898/2026.07.21.739918v1
New favorite way to color code microscopy data: this is a real 3D confocal image of an unidentified larvae stained for actin (muscles fibers here). Looks like a watercolor painting! #microscopy #ImageJ #FluorescenceFriday #microscopyMonday
New resource for teaching and learning BioImage Analysis, long in the making, from @tischi.bsky.social and friends, incl. @carpentries.carpentries.org. With roots in the material developed for NEUBIAS workshops.
🔬Modern instruments generate vast bioimage data, yet few experts can analyze it. The authors of this new open access paper present here a modular, open-source bioimage analysis training resource, that allows efficient course design and delivery.
Holy cow what a couple innings!! Bonkers! #GoPhils
Announcing a Multiplex Image Analysis and Computational Pathology workshop through the Quantitative BioImaging Society Talks on cell segmentation and phenotyping, data normalization, spatial analysis, and more! Hosted by @lji.org in San Diego, CA, Sept. 15-16 quantitativebioimaging.com/miacp2026/
Multiplex Image Analysis & Computational Pathology - QBI Society
quantitativebioimaging.com
This is the kind of things PhD student Louis can do with @ekatrukha.bsky.social's CurveMorph: following protein movement whithin growing axons in his stunning 80-hour movies
We were struggling with wiggling neurites on our long term imaging data and the poor existing plugins to deal with them, until I thought "let's ask Eugene about it". Lo and behold, he just made the perfect plugin for dynamic kymograph generation!
Keeping track of OME-Zarr support across the ecosystem isn't always easy. Over the past few weeks, we've been speaking with stakeholders about experiences, successes, and remaining gaps. Here is our snapshot of where things stand and where effort may be most valuable next: image.coop/blog/posts/2...
OME-Zarr Pulse Check: Spec, Tooling, and Community – Image Cooperative
Feedback and insights from chatting to the community and analysing ecosystem data over the last six weeks.
image.coop
🔬 Tutorial Spotlight: Build custom image analysis tools without starting from scratch. Tim shows you napari's power for microscopy, satellite data, and everything between 🛰️ Extend, visualize, annotate like a pro! #SciPy2026 🔗 scipy2026.scipy.org
Okay here it is: my mom's Punjabi curry recipe. It's super flexible and can be modified for almost anything, which I'll point out. Reposted from twitter in the before times
“PUNJABI AA GAYE OYE”
I'm happy to announce the summer 2026 Open Bioimaging Practices meetings schedule. Before the summer holidays, we have 2 exciting meetings planned to learn about all things OME-Zarr.
🎉 Announcing the naPLari hackathon in Kraków, Poland 🇵🇱, July 24–29 2026, after EuroSciPy! Hack on napari, join deep dives, meet the team. All experience levels welcome! 📝 Register by July 1: napari.typeform.com/naplari-hack #napari #ScientificPython #OpenSource #EuroSciPy #BioImageAnalysis
naPLari Hackathon
Questionnaire for the napari hackathon in Krakow, Poland, July 24-29th, 2026.
napari.typeform.com
No matter how it improves in the future , I will never feel the same level of fondness for matplotlib as I feel, deep in my bones, for ggplot😍🥰
A CAREER-HIGH 13 STRIKEOUTS FOR CRISTOPHER SÁNCHEZ!
📣 If you’re at #PyConUS2026 next week, catch Inessa Pawson and @juanitagomezr.bsky.social at the Community Showcase on Sunday with flyers and stickers for #SciPy2026! 🙌 If you have questions about the conference or just want to connect with the community, this is your chance 🎉
A milestone day for our team with the publication of our work on biocatalytic cascades for macrocyclic peptide manufacturing. This establishes a new beachhead in the synthesis of this important new modality for the industry! #MerckChemistry
Member Eric Perlman takes the stage at @embl.org to announce our launch as an international worker co-op for #OSS scientific imaging software. First task supported by @biohub.org is accelerating #OMEZarr towards a 1.0 alpha early 2027. Stay tuned! image.coop #GIDE2026 @gideproject.bsky.social
The Journal of Open Source Software (JOSS) is looking for a new Editor-in-Chief! This is a volunteer position (as everything else at JOSS), but a great chance to steer one of the coolest things in the academic publishing realm. blog.joss.theoj.org/2026/05/call...
JOSS is seeking a new Editor-in-Chief | Journal of Open Source Software Blog
Blog for the Journal of Open Source Software • <a href='https://joss.theoj.org'>https://joss.theoj.org</a>
blog.joss.theoj.org