@sebastianbeier.bsky.social has fixed some minor issues in our read trimmer Trimmomatic for R0.41 since the latest release just a few months ago academic.oup.com/bioinformati.... github.com/usadellab/Tr.... Please note, that the website trimmomatic.com is not ours and send you to commercials.

Trimmomatic: a decade of feature-rich, high-performance NGS read preprocessing

AbstractMotivation. Trimmomatic is a widely adopted tool for preprocessing high-throughput sequencing data, particularly from Illumina platforms. Since its

academic.oup.com

Our paper on Trimmomatic v0.40 is officially published in Bioinformatics! A decade after the original, the ~50,000-times-cited NGS trimmer gets a major overhaul. Here's what's new 🧵 doi.org/10.1093/bioi... #Bioinformatics #NGS

Trimmomatic: A decade of feature-rich, high-performance NGS read preprocessing

AbstractMotivation. Trimmomatic is a widely adopted tool for preprocessing high-throughput sequencing data, particularly from Illumina platforms. Since its

doi.org

The @denbi.bsky.social crew & friends from Germany at #BioHackEU25!

🎉Thank you all for joining #BioHackEU25! A special thanks to our online and overseas participants 🙌 staying up late hacking through different projects with us. 👏It has been a great week!! And we look forward to seeing you next year for #BioHackEU26 in Barcelona, Spain!🥳

✨ We're halfway through #BioHackEU25! This afternoon, all projects will present their 🎯 goals and challenges they’ve encountered and seek expertise from participants. Keyword of this year: #Data, #Research, #FAIR and #Metadata

Today, a global community of hackers gathers in Berlin 🇩🇪 for the start of #BioHackEU25. Since 2019, over 2200 participants have gathered together for an intense week of collaboration to advance 275 projects. Read the news: https://loom.ly/6sE_kdI

Marie Bolger closes the session at the #SOLRUB2025 with a presentation about the application of Helixer to the annotation of the #Solanaceae genomes.

Hello, Bluesky! We’re AgBioData, a consortium of agricultural databases, researchers, and curators working to make genomic, genetic, and breeding data FAIR. Follow us for updates on: 🔬 Data standards 📊 Tools & best practices 🌾 Community news 📢 Sustainability #AgBio #OpenScience #FAIRdata #AgBioData

@denbi.bsky.social is the next days at the #EPPS25 in Bonn. We teamed up with @wggc-de.bsky.social for a workshop and with #phenet for a booth. #plant #phenomics @sebastianbeier.bsky.social

Is plant single cell/nuc. & spatial transcriptomics your passion? Do you want to understand plant adaptation using cutting edge molecular & bioinformatics tools? Then come and join us to work together with @ceplas.bsky.social & @wggc-de.bsky.social. #plantjobs www.fz-juelich.de/de/karriere/...

Did you know that you can build pipelines in @galaxyproject.bsky.social? Check out this talk by Björn Grüning, head of the Galaxy Team @uni-freiburg.de, and discover how #Galaxy how to get started with the platform and create pipelines right away! 🔗 youtu.be/OIzWTd93k5c?... #usegalaxy #genomics

How to build a pipeline in Galaxy?

YouTube video by ERGA - European Reference Genome Atlas

youtu.be

Yes, there's "accessible" in my group's title. Come at me, Trump! Just kidding, don't come at me, except if you're looking for a job in biomedical AI. Hiring at all levels, up to 100% of E13. If you're enthusiastic about science and open source, consider applying! Please help spread the word. :)

Computational Health Center@comphealthmunich.bsky.social · last yr.

We‘re excited to welcome @slobentanzer.bsky.social, new PI at the intersection of @diabresearch-dzd.bsky.social and @comphealthmunich.bsky.social @www.helmholtz-munich.de! His group focuses on „Accessible Biomedical AI Research“ - and he‘s hiring! Open positions on slolab.ai and: bit.ly/slolab.

First keynote talk of @denbi.bsky.social Spring School: Sara and @sebastianbeier.bsky.social talked about #RDM and #FAIR basics

#PlantSciJobs #PlantSciJob Research Associate / PostDoc: Analysis of Brassicaceae (Camelina) multi-omics data aimed at enhancing plant stress adaptation In @usadellab.bsky.social 's lab @fz-juelich.de Deadline: 6 April 2025 www.deutsche-botanische-gesellschaft.de/en/job-openi...

Today the @denbi.bsky.social spring school started with an introduction to Bielefeld, Bielefeld University, CeBiTec and de.NBI / #ELIXIR_DE as well as an introduction to #Lipidomics.

📣 BioHackathon Europe 2025 Call for project proposals is now open! Submit your #bioinformatics project 🧑‍💻 for #BioHackEU25 by 14 April: biohackathon-europe.org 🙌 We welcome proposals that focus on areas supporting the work of ELIXIR, such as #FAIRdata, #metadata standards, #ontologies and more.

BioHackathon Europe

Find out about the 2025 BioHackathon Europe, where hackers get together to make life science research easier.

biohackathon-europe.org

Flash Talk about @nfdi4plants.bsky.social at the #Plant2030 status meeting. Organize and store your plant research data for free as part of the German #NFDI. Check it out www.nfdi4plants.org free as in beer and open source.

It is way to early... On my way to the annual meeting of plant sciences funded by the BMBF in Potsdam. Looking forward to some interesting science and meeting some dear colleagues

We are pleased to invite you to the International Symposium on Integrative #Bioinformatics co-organised as Gatersleben Research Conference (September 10–12, 2025 @leibnizipk.bsky.social Germany). This symposium is supported by @denbi.bsky.social / ELIXIR-DE. Read more: www.denbi.de/de-nbi-event...

WOW 🤩 Roche just released a completely new way of sequencing DNA. A game changer? www.roche.com/media/releas...

Roche unveils a new class of next-generation sequencing with its novel sequencing by expansion technology

Roche's innovative sequencing by expansion (SBX) technology represents a leap forward in next-generation sequencing (NGS), which is playing a vital role in decoding complex diseases like cancer,...

roche.com

Come visit the @denbi.bsky.social booth at the #CLIB International Conference in Düsseldorf! Our team is excited to connect with you and share insights into #service, #training and #cloudcomputing. See you there!

Applying LLMs to biomedical research today can go one of two ways: we either use a closed-source web app, or we get coding ourselves. Many researchers lack training for the latter, so their only choice is the former. We want to change that. www.nature.com/articles/s41...

Ich meine das mit dem Aufruf zum Wählen übrigens ernst. Laut Forsa könnten wir 28% (!) Nicht-Wähler_innen haben. Liebe Wissenschaftler_innen, liebe Wissenschaftsinstitutionen: Euch hören viele zu. Erinnert sie, wie wichtig Wählen ist. Für unsere Demokratie. & ermuntert sie, Botschaft weiterzutragen!

Amrei Bahr@amreibahr.bsky.social · 2y ago

27 Tage bis zur vorgezogenen Bundestagswahl. Wissenschaft hat Grund zur Sorge angesichts wissenschafts-, demokratie- & menschenfeindlicher Politik. Was tun? 1️⃣ Relevanz von Demokratie & Menschenrechten betonen. 2️⃣ ALLE, die uns zuhören, auffordern, von Wahlrecht Gebrauch zu machen!⬇️ #LauteWissenschaft

📜 One organ to infect them all: the Cuscuta haustorium 🧑‍🔬 Vasili A. Balios, Kirsten Krause, et al. 📔 @annbot.bsky.social 🔗 academic.oup.com/aob/advance-... #️⃣ #PlantScience #PlantImmunity #PlantParasitism #ParasiticPlants #Cuscuta #Haustoria

One organ to infect them all: the Cuscuta haustorium

AbstractBackground. Research on the parasitic plant genus Cuscuta has flourished since the genomes of several of its species were published. Most of the re

academic.oup.com

Der Rest folgt - schriftlich gleich im Newsletter #ArbeitInDerWiss, dessen Abo sich ohnehin lohnt. arbeitinderwissenschaft.substack.com #IchBinHanna #HannaWählt2025

Arbeit in der Wissenschaft | Amrei Bahr | Substack

In diesem Newsletter dreht sich alles um Arbeit in der Wissenschaft: Um ihre Rahmenbedingungen und Grundlagen, ihre Highlights und Schattenseiten, darum, wie sie sein sollte, warum sie allzu oft ganz ...

arbeitinderwissenschaft.substack.com

Amrei Bahr@amreibahr.bsky.social · 2y ago

Probleme von #IchBinHanna hat die 🚦 nicht gelöst. Da muss die neue Bundesregierung nochmal ran! Aber wie?! Wir haben 6 Forderungen aufgestellt. Hier kommt die 1.: Schluss mit Zahlenspielen -- Postdocs raus aus dem #WissZeitVG! Mehr unter #HannaWählt2025 @drkeichhorn.bsky.social @kubon.bsky.social

@lucasmunnes.bsky.social presenting genomes in the Morelloid clade and drought stress for one member i.e. S.nigrum which we collected just in front of our institute @hhu.bsky.social)

@angelakranz.bsky.social presenting DataPLAN as part of the @nfdi4plants.bsky.social data management consortium at #PAG32. It makes data management plan generation painless, works online and you immediately see what happens. Try it dmpg.nfdi4plants.org or read about it here doi.org/10.3390/data...

Gestern: "Schlimm, dass die Lokführer streiken! Die sind einfach gierig! Die Bahn ist marode, woher soll das Geld denn kommen?!?". Heute:

Die Union wollte wissen, wie viele Migranten und Geflüchtete hinter der Zunahme der Straftaten gegen queere Menschen stecken. Doch die meisten Taten wurden von Deutschen begangen - und von Rechten. Der Ausländeranteil ist sogar zurückgegangen. https://www.volksverpetzer.de/aktuelles/union-anfrage-s

Rechte schuld an Zunahme der Straftaten gegen queere Menschen - Sorry, Union!

Die Union wollte wissen, wie viele Migranten hinter der Zunahme der Straftaten gegen queere Menschen stecken. Doch die meisten Taten wurden von Deutschen begangen - und von Rechten. Der Ausländeranteil ist zurückgegangen.

volksverpetzer.de

Looking forward to my online presentation as part of the Waterman Seminar Series @ IPK Gatersleben next week where I'll talk about our plant #phenotyping app #GridScore. Sneak peek at some of the slides below. #RSE