🚀 Interested in joining our Computational Evolution group at ETH Zürich in Basel @bsse.ethz.ch as a Postdoc? We will be hosting ETH AI Center's Postdoc Fellows on AI x evolution, AI x single cell biology as well as AI x public health. Apply now 👉 ai.ethz.ch/apply Deadline: Oct 27, 2026

Fellowship Programs

The application portal for the ETH AI Center Fellowship Programs is now closed. The deadline for submitting reference letters is 23:59 CET on November 14, 2025.

ai.ethz.ch

Welcome Eneida Hatcher from the NIH! Her extensive experience will strengthen Switzerland's leadership in pathogen tracking and epidemic preparedness, including through flagship global project the Pathogen Data Network (PDN). @dessimoz.bsky.social @tanjastadler.bsky.social

Eneida Hatcher joins SIB as Centre for Pathogen Bioinformatics director

Genomic surveillance expert Eneida Hatcher joins SIB today as director of the Centre for Pathogen Bioinformatics. Coming from the US National Institutes of Health (NIH), she brings over a decade of ex...

sib.swiss

Teams in the Democratic Republic of the Congo & Uganda have now shared the first sequences from the current Ebola (Bundibugyo virus) outbreak using Pathoplexus, just days after cases were confirmed. Read more about the response to Bundibugyo virus here: pathoplexus.org/news/2026-05...

Pathoplexus | Ebola: Rapid response to the Bundibugyo virus outbreak in the DRC and Uganda

Pathoplexus is a new, open-source database dedicated to the efficient sharing of human viral pathogen genomic data, fostering global collaboration and public health response.

pathoplexus.org

Celebrating excellence in research ✨ Big congrats to #AdrianLison and #XianggeLuo on receiving the #ETH Medal for their doctoral research 👏🏽 on infectious disease surveillance and tumour heterogeneity, respectively > tinyurl.com/6kzc9dep @ethz.ch | @tanjastadler.bsky.social | #NikoBeerenwinkel

Mulberry, Pilarski, Dinger, and @tanjastadler.bsky.social present a phylodynamic method that generalizes the traditional birth-death approach to model cellular dynamics to an age-dependent phylodynamic model. 🔗 doi.org/10.1093/molb... #evobio #molbio

Age-dependent Phylodynamics with Application to Single-cell Lineage Trees

Abstract. As novel technologies for single-cell lineage tracing emerge, phylogenetic and phylodynamic tools are increasingly being used to study developmen

doi.org

We have an open Assistant Professor position (tenure track) @ethz.ch in Computational Immunology - ethz.ch/en/the-eth-z... Please apply / share!

Assistant Professor (Tenure Track) of Computational Immunology

ethz.ch

What’s it really like to work & study at #ETHZurich D-BSSE in #Basel? 🎬 Our new film shares first-hand insights from staff members themselves. 🎥 Full film on YouTube: youtu.be/Kw-NEcVCr1k @ethz.ch #AcademicResearch #LifeSciences #Biotechnology #Interdisciplinary #DBSSE

Studying and working at ETH Zurich

YouTube video by Department of Biosystems Science, ETH Zurich

youtu.be

Thrilled & honoured to have run the first @pathoplexus.org workshop with @chaoranchen.de @pagasi.bsky.social @kanyerezi30.bsky.social & Arthur Shem Kasambula at @pha4ge.bsky.social on Saturday! 🎉🤝 A fantastic turnout & wonderful time spent with curious users!

New Paper🚀! Our work analysing the Swiss national SARS-CoV-2 wastewater 🚱 monitoring data is now published in PLOS Water 💧 @plos.org journals.plos.org/water/articl... (Julien Riou, @tanjastadler.bsky.social @trj2.bsky.social Christoph Ort et al)

Open position at the Swiss Institute of Bioinformatics: We are looking for a Director of the Center of Pathogen Bioinformatics apply.refline.ch/499599/0346/... I am in the Center's steering board together with fantastic colleagues (Emma Hodcroft @firefoxx66.bsky.social, Richard Neher @neher.io, and

We are excited to announce the Latsis Symposium 2026: The history of epidemics – are there lessons for the future? latsis-epidemics.ethz.ch We have a great lineup of international speakers - true leaders in this field. The symposium is held at ETH Zürich, Switzerland, from the (1/2)

Homepage

Latsis Symposium 2026: The history of epidemics - are there lessons for the future?

latsis-epidemics.ethz.ch

Tanja Stadler @tanjastadler.bsky.social @ethz.ch awarded prestigious #DoronPrize for pioneering work in computational evolution and public health. Big congrats, Tanja! > u.ethz.ch/IxSY8

AI is revolutionising palaeontology | New @NatureRev paper by @ethz.ch & UZH shows how #AI tools are transforming the analysis of complex fossil data and evolutionary patterns – unlocking new insights across deep time > u.ethz.ch/BjDtR @tanjastadler.bsky.social

🗓 Pathoplexus turns ONE! 🎂🎉 In the past year we’ve grown from 4 pathogens to a truly global, community-driven platform for transparent, equitable & impactful pathogen sequence sharing. 📰 Read the full update: pathoplexus.org/news/2025-08... 1/10

Loculus, an open-source software for building pathogen sequencing databases, is on the shortlist for #SIBRemarkableOutputs 2024. It’s a joint project by the teams of @neher.io, @tanjastadler.bsky.social and @firefoxx66.bsky.social xx66.bsky.social. Congratulations!

SIB Swiss Institute of Bioinformatics@sib.swiss · last yr.

💡 The SIB Remarkable Outputs 2024 are out ! This shortlist of the most outstanding works produced by SIB members in 2024 showcase the latest advances in the Swiss bioinformatics field. Attend their presentations at [BC]2! 👉 Discover this shortlist of outstanding works www.sib.swiss/remarkable-o...

Vaughan & @tanjastadler.bsky.social develop a method to infer multitype population trajectories and apply it to MERS-CoV, revealing transmission patterns between camels and humans. 🔗 doi.org/10.1093/molbev/msaf130 #evobio #molbio #virus

Bayesian Phylodynamic Inference of Multitype Population Trajectories Using Genomic Data

Abstract. Phylodynamic methods provide a coherent framework for the inference of population parameters directly from genetic data. They are an important to

doi.org

In this project led by James Munday, we quantified the post-sampling degradation of viral RNA in wastewater. Taking into account this degradation is core towards unbiased quantification of epidemiological dynamics based on wastewater data.

James Munday@jdmunday.bsky.social · last yr.

We have a new preprint 📝 *Post-sampling degradation of viral RNA in wastewater impacts the quality of PCR-based concentration estimates* Now on bioRxiv doi.org/10.1101/2025... with @tanjastadler.bsky.social, trj2.bsky.social, Christoph Ort and others

We have a new preprint 📝 *Post-sampling degradation of viral RNA in wastewater impacts the quality of PCR-based concentration estimates* Now on bioRxiv doi.org/10.1101/2025... with @tanjastadler.bsky.social, trj2.bsky.social, Christoph Ort and others

Post-sampling degradation of viral RNA in wastewater impacts the quality of PCR-based concentration estimates

Successful wastewater-based infectious disease surveillance programs depend on regular, reliable molecular detection of nucleic acids in municipal wastewater systems. This process is challenged by the...

doi.org

📢Today Pathoplexus announces the inclusion of 2 new viral pathogens: RSV (A & B) and HMPV. These respiratory viruses cause a serious health burden, particularly in infants & the vulnerable, & Pathoplexus aims to support sequence sharing to improve understanding & response. 1/4

Drei aus meiner Sicht zentrale Herausforderungen für die Bildungs-, Forschung- und Innovations-Landschaft der Schweiz: wissenschaftsrat.ch/blog/die-gro...: Blog Beitrag zum 60. Geburtstag des Schweizer Wissenschaftsrat, Happy Birthday!

🗓️ Pathoplexus has now been around for 7 months! And both we and our users have been busy - so we wanted to share some updates & highlights! 📰 You can see our full News Item here: pathoplexus.org/news/2025-04-16-spring-update 1/9

Pathoplexus | Pathoplexus Spring Update

Pathoplexus is a new, open-source database dedicated to the efficient sharing of human viral pathogen genomic data, fostering global collaboration and public health response.

pathoplexus.org

Thank you, @tanjastadler.bsky.social, for your great efforts during the #Covid19 pandemic! Watch the Switzerland-Germany comparison on measures 5 years after the breakout of #SarsCoV2 on @zdfde.bsky.social > www.zdf.de/play/magazin...

I first read the famous 1925 Yule paper at its 80th birthday - during my Master thesis work, and it shaped my research profoundly. It was a pleasure and honour to lead this special 100 anniversary issue celebrating Yule's legacy and phylogenetic models with @noahrosenberg.bsky.social and Mike Steel!

Royal Society Publishing@royalsocietypublishing.org · 2y ago

A mathematical theory of evolution: phylogenetic models dating back 100 years—a new #PhilTransB theme issue describes recent developments in models of #evolutionary trees and networks, and in #phylogenetic modeling for applications in biology: https://buff.ly/41r1wkR @tanjastadler.bsky.social

A mathematical theory of evolution: phylogenetic models dating back 100 years—a new #PhilTransB theme issue describes recent developments in models of #evolutionary trees and networks, and in #phylogenetic modeling for applications in biology: https://buff.ly/41r1wkR @tanjastadler.bsky.social

buff.ly

Quantification of developmental processes (here early Danio rerio development) with our novel Bayesian phylogenetic methodology - leveraging single cell lineage tracing data based on CRISPR/Cas9 technology royalsocietypublishing.org/doi/10.1098/... Antoine Zwaans @seidels.bsky.social Marc Manceau

A Bayesian phylodynamic inference framework for single-cell CRISPR/Cas9 lineage tracing barcode data with dependent target sites | Philosophical Transactions of the Royal Society B: Biological Sciences

Analysing single-cell lineage relationships of an organism is crucial towards understanding the fundamental cellular dynamics that drive development. Clustered regularly interspaced short palindromic repeats (CRISPR)-based dynamic lineage tracing relies ...

royalsocietypublishing.org

Featured article: The lives of cells, recorded go.nature.com/4g2gRwG by Amjad Askary, Wei Chen, @choijunhong.bsky.social, Lucia Y. Du, @elowitzlab.bsky.social, @james-gagnon.bsky.social, @schierlab.bsky.social, @seidels.bsky.social, @jshendure.bsky.social, @tanjastadler.bsky.social & Martin Tran

Thoughts on how AI can help prepare for the next pandemic - Thanks for having led this work @mugkraemer.bsky.social Joseph L.-H. Tsui Serina Y. Chang, @sjbhatt.bsky.social - it is an honour to be part of it!

Moritz Kraemer@mugkraemer.bsky.social · 2y ago

AI is poised to accelerate understanding in infectious diseases, but its value needs to be demonstrated through close collaboration between research, industry, society, and policy. Paper free to read: rdcu.be/eaxEw Summary here: www.ox.ac.uk/news/2025-02...

SRF - the core Swiss public service journalism stakeholder - plans to majorly cut on science journalism. You can still sign our petition if you think this is problematic openpetition.eu/!sciencejour...

Fakten statt Falschinformationen: Für einen starken Wissenschaftsjournalismus! - Online-Petition

Offener Brief aus der Wissenschaft an SRF Sehr geehrte Direktion der SRG, sehr geehrte Geschäftsleitung von SRF, sehr geehrte Medien- und Wissenschaftspolitiker:innen Mit grosser Besorgnis haben wir z...

openpetition.eu

Major cuts planned in SRF science journalism in Switzerland - the public service media. Scientists today launched a petition ‘Facts Instead of Misinformation: For Strong Science Journalism!’ Become one of over 1,800 signatories www.openpetition.eu/ch/petition/...

Facts Instead of Misinformation: For Strong Science Journalism! - Online-Petition

Open Letter from the Scientific Community to SRF Dear Management of SRG, Dear Executive Board of SRF, Dear Media and Science Policy Makers, We are deeply concerned about SRF’s plans to make significan...

openpetition.eu

Starke Kürzungen im SRF Wissenschaftsjournalismus in der Schweiz geplant. WissenschaftlerInnen starteten heute eine Petition "Fakten statt Falschinformationen: Für einen starken Wissenschaftsjournalismus!" Werde eine(r) von bereits über 1'800 UnterzeichnerInnen openpetition.eu/!sciencejour...

Fakten statt Falschinformationen: Für einen starken Wissenschaftsjournalismus! - Online-Petition

Offener Brief aus der Wissenschaft an SRF Sehr geehrte Direktion der SRG, sehr geehrte Geschäftsleitung von SRF, sehr geehrte Medien- und Wissenschaftspolitiker:innen Mit grosser Besorgnis haben wir z...

openpetition.eu