Anh Hoang Le, PhD 🏳️‍🌈

@anhhle2702.bsky.social

Sir Henry Wellcome fellow studying macrophage migration and mechanobiology @UCL. BSc Biochemistry @Bristol. PhD Cancer Biology @CRUK Scotland Institute. 🏴󠁧󠁢󠁳󠁣󠁴󠁿 Cell lover by day, takeaway lover by night. https://hoanganhle2602.wixsite.com/cellsandtheirwonders

This epic paper, which has been a heroic 10 year journey for the lead author, Ricardo Barrientos, is finally out in Cell today! Many thanks to all co-authors, especially Billie Meadowcroft and Andela Saric for their beautiful MD simulations www.cell.com/cell/fulltex...

Basement membrane turnover controls cell shape

Basement membranes are scaffolds of proteins, like collagen, that give organs shape. During development, basement membranes must adapt to the growing organ. We infer how fast the basement membrane ada...

cell.com

If you're Chilean or work in Chile, or if your interest is w/ immunology and #devbio, submit to our special issues: 1. Chilean Developmental Biology: at Home and Around the World 2. Tissue Biology – at the interface between immunology and developmental biology www.sciencedirect.com/journal/cell...

Cells & Development | Article collections | ScienceDirect.com by Elsevier

Read the latest chapters of Cells & Development at ScienceDirect.com, Elsevier’s leading platform of peer-reviewed scholarly literature

sciencedirect.com

Yey, I figured out how to display 3D movie stacks in #ChimeraX, thanks to @dabiophysicist.bsky.social for the suggestion. My original tiff was not ome-tiff so you'll need to convert it first (do this with #Python), then adjust voxelsize in ChimeraX so the image isn't flat, record, and voila!

Anh Hoang Le, PhD 🏳️‍🌈@anhhle2702.bsky.social · 3w ago

One drawback tho and unless I'm not aware of an alternative, it seems if you want to display a time series stack, you have to save each time frame as a separate stack before loading them into #ChimeraX. If you don't, it will superimpose all timepoints into 1 single 3D stack. This, #napari is better!

One drawback tho and unless I'm not aware of an alternative, it seems if you want to display a time series stack, you have to save each time frame as a separate stack before loading them into #ChimeraX. If you don't, it will superimpose all timepoints into 1 single 3D stack. This, #napari is better!

Anh Hoang Le, PhD 🏳️‍🌈@anhhle2702.bsky.social · 4w ago

So it turns out that you can visualise 3D cells really well #chimeraX, better than #napari dare I say. Very intuitive. You can adjust different representations, surface, volume, etc, and to make a movie. I'm blown away because I learned ChimeraX for protein structure visualisation, not cells! 🤯

See this? This = implanting mouse embryo. Usually this happens inside its mother and is invisible to us, but we can actually watch implantation ex vivo with the hope of understanding why implantation goes awry in embryos of older women. A 🧵...