Very happy to share our new review on visual computation in the cephalopod brain, with @vangeliqueallen.bsky.social, out now! We discuss exciting recent advances in understanding how the radically different brain of cephalopods processes the visual scene. 🐙🔬👀 www.sciencedirect.com/science/arti...
Benjamin Cowley
@benjocowley.bsky.social
Assistant Professor in computational neuroscience at Cold Spring Harbor Laboratory. Think cortically, act neuronally. cowleygroup.cshl.edu
The Neuroscience Department at UC Berkeley is hiring an Asst Professor in Computational Neuro. All areas of computational/theoretical neuro are welcome. Deadline Oct 30. Join our neuroscience community! aprecruit.berkeley.edu/JPF05446 #AcademicJobs #Neuroscience #NeuroJobs
Assistant Professor - Computational Neuroscience - Department of Neuroscience
University of California, Berkeley is hiring. Apply now!
aprecruit.berkeley.edu
📣 Our paper introducing openretina, a collaborative framework for retina modelling across datasets and species, is now published as an eLife Reviewed Preprint. Paper: elifesciences.org/reviewed-pre... Code: github.com/open-retina/... Docs: open-retina.org
🎉 *extremely* excited to share our human single neuron + movie dataset is out in #ScientificData! 📄 Human neuron activity during an 83-minute movie from 2,286 neurons and 29 patients 🔗https://www.nature.com/articles/s41597-026-07955-0 1st public dataset from @humansingleneuron.bsky.social!🧵
**Four** positions in AI/ML for biology at @dukemedschool.bsky.social, including in Neurobiology. @scottsoderling.bsky.social and David Page are leading a tremendous initiative in Discovery AI. Wonderful colleagues, wonderful place.
AI/ML for Biology - 4 tenure-track assistant professor positions - Durham, North Carolina job with Duke University - Biochemistry & Cell Biology | 12862109
Discovery AI Initiative and Departments of Biochemistry and Cell Biology, Integrative Immunobiology, Neurobiology, and Pharmacology & Cancer Biology
nature.com
🚨We’re moving! 🚨 Starting this fall, my lab will be moving to the Center for Neural Science at NYU and the Center for Computational Neuroscience at the @flatironinstitute.org. 1/
Ecological Visual Processing in the Mouse - with @michaelgoard.bsky.social @crisniell.bsky.social @mbeyeler.bsky.social Visual computations that are engaged in ecological contexts: active sensing, motion processing, scene analysis, distance estimation, and spatial perception. doi.org/10.1146/annu...
I have always believed that ideas from basic systems neuroscience could eventually help people. But for years that felt more like hope than reality. But look! This is one of the most personally satisfying papers my lab has produced because we’re getting there. www.biorxiv.org/content/10.6... 🧪🧵 1/
Updated preprint and code from my lab. If you want to explore more realistic neural dynamics in models that can still perform visual tasks, check it out! www.biorxiv.org/content/10.1...
Modeling Dynamical Vision with Biologically Plausible Recurrent Convolutional Networks
Convolutional Neural Networks (CNNs) trained for image recognition have demonstrated remarkable conceptual similarities to the primate ventral visual pathway, but their standard feedforward architectu...
biorxiv.org
might be some chess involved too...
The Neural Control & Computation Lab is recruiting a Postdoctoral Fellow to investigate the neural basis of learning, flexible neural computation, and skilled movement control using large-scale electrophysiology from single-neuron populations in non-human primates 🧠🐒 www.ncclab.ca/join-the-lab
Now published - the #BANC! A full central nervous system (CNS) connectome of a limbed animal at single-synapse resolution, enabling us to follow sensory-motor arcs and understand how the CNS controls the body. rdcu.be/fncjS. #neuroscience. Video by @quorumetrix.bsky.social 1/18
🚨New dataset just dropped🚨 Introducing Places in the Wild: 67,000 RAW-format photographs (45 mpix) densely sampled from 810 places (260 basic-level categories). This is 11x the number of pixels in ImageNet! Preprint is here: arxiv.org/abs/2606.02481 1/
Places in the Wild: A Large, High-Resolution RAW Photograph Dataset for Ecologically Valid Vision Research
Large image datasets have accelerated progress in cognitive neuroscience and computer vision. However, most datasets are low-resolution, internet-sourced JPEGs with unknown capture conditions and limi...
arxiv.org
Two simple ideas for building improved brain encoding models: 1. learn to use representations from all model layers via a gating mechanism + 2. start from natively multimodal features for multimodal predictions. State of the art performance; see mirage-brain.epfl.ch for details #NeuroAI 🧠🤖🧪
MIRAGE: Adaptive Multimodal Gating for Whole-Brain fMRI Encoding
mirage-brain.epfl.ch
🧠 When you watch a movie, your brain blends sight, sound, and speech into a single experience. Should models of the brain blend them too, or keep the senses separate until the very end? We built MIRAGE to find out. It sets a new SOTA for predicting whole-brain fMRI from movies. 🧵
Neuropixels + Optogenetics = Neuropixels Opto Combining high-resolution electrophysiology and optogenetics. 960 sites, 28 emitters, 2 colors. Today in @natmethods.nature.com doi.org/10.1038/s415... Thanks to @wellcometrust.bsky.social, @alleninstitute.org, @hhmijanelia.bsky.social & team.
I’m happy to share a protocol we’ve been working on for building modular, synchronized multimodal data acquisition systems for systems neuroscience behavior rigs. @mbd1mbd1.bsky.social @arkarupbanerjee.bsky.social dx.doi.org/10.17504/pro...
A modular toolkit for synchronized multimodal data acquisition in systems neuroscience
A modular toolkit for synchronized multimodal data acquisition in systems neuroscience. Animal behavio. Read full protocol, steps, and materials on protocols.io
dx.doi.org
Story time friends... Ring attractor networks rely on fine-tuned symmetric connectivity. The fly head direction network has ring attractor dynamics but heterogeneous connectivity. How is this possible? 1/🧵 Link: www.biorxiv.org/content/10.6...
New preprint with @lingqiz.bsky.social: Neurodata Without Boredom: Benchmarking Agentic AI for Data Reuse arxiv.org/abs/2605.12808 1/10
Finally, today is the day: Josefine Zerbe will present and release our new multi-echo 7T fMRI dataset LAION-fMRI during #VSS2026, with >30 fMRI session per subject and unprecedented stimulus diversity. Come to Talk Room 1 (Scene perception) today at 5:15. Details will follow in a separate thread!
Wow, (bird) vision is awesome!
Inside bird eyes is a strange and mysterious structure called the pecten oculi. It looks like a pancake flipper, or maybe a radiator. Some 350 years after anatomists first described it, biologists finally figured out its purpose. www.quantamagazine.org/how-the-bird...
I'm proud to say we are releasing LAION-fMRI, a densely sampled 7T fMRI dataset of natural images, with very broad stimulus sampling for testing countless hypotheses and for deeply exploring brain representations. The dataset is now available at laion-fmri.hebartlab.com What does LAION-fMRI offer? 🧵
LAION-fMRI - a 7T fMRI dataset of human vision
LAION-fMRI (LfMRI / LAION MRI dataset): 5 subjects, 25,052 launch-release natural images, 165 acquired 7T fMRI sessions with single-trial GLMsingle betas, retinotopy, localizers, and diffusion.
laion-fmri.hebartlab.com
Where, exactly, does learning happen in the brain? Out today in @nature.com, we identify a synaptic locus of birdsong learning and show that the circuit can be tuned to make birds learn faster - but at a cost. Read on👇 #neuroskyence 🧪 #prattle 💬 #bioacoustics Shareable link: rdcu.be/fiyrS
A synaptic locus of song learning - Nature
Combining a computational framework and optogenetic and chemogenetic manipulations within and downstream of the cortico-basal ganglia circuit identifies the specific cortico-basal ganglia synapse...
nature.com
📢 Applications are open! This meeting brings together scientists using data-driven #AI to analyze + model neural circuits and uncover how the brain performs complex computations. 🧠 Apply by May 28 ➡️ janelia.news/NAI26 @computingnature.bsky.social @sinzlab.bsky.social @srinituraga.bsky.social
Data-Driven AI for Neuroscience
Organizers Carsen Stringer, HHMI/Janelia Research Campus Srini Turaga, HHMI/Janelia Research Campus Atika Syeda, HHMI/Janelia Research Campus Fabian Sinz, University of Göttingen Alice Wang,
janelia.news
Excited about our new preprint: “The illusory simplicity of the feedforward pass: evidence for the dynamical nature of stimulus encoding along the primate ventral stream” arxiv.org/abs/2604.12825 Work with Sushrut Thorat, Anna Mitola, Paolo Papale, Peter König & Tim Kietzmann 🧵 thread below
The illusory simplicity of the feedforward pass: evidence for the dynamical nature of stimulus encoding along the primate ventral stream
In studying primate vision, a large body of work focuses on the first feedforward sweep. During this initial time window, information is thought to pass through ventral stream regions in a stage-like ...
arxiv.org
On central circuit control from my lab, in collaboration with @tonyzador.bsky.social www.nature.com/articles/s41...
Specific expansion of motor cortical projections in a singing mouse - Nature
High-throughput barcoded neuroanatomy of two closely related rodent species with divergent vocalizations reveals differences in long-range projection motifs in the brain that may s...
nature.com
New paper from the lab! "Plasticity and language in the anaesthetized human hippocampus" www.nature.com/articles/s41...
Plasticity and language in the anaesthetized human hippocampus - Nature
In the hippocampus, complex processing of sensory stimuli occurs even in the unconscious state.
nature.com
🥳 Super excited to share our lab's first preprint, led by @hungyun.bsky.social "Distinct tasks engage shared neural subspaces in human hippocampus and anterior cingulate cortex" www.biorxiv.org/content/10.6... 🧵(1/9)
biorxiv.org
New preprint: Whole-body 3D kinematics of freely behaving 𝐷𝑟𝑜𝑠𝑜𝑝ℎ𝑖𝑙𝑎 New tech from @blobology.bsky.social & others at @hhmijanelia.bsky.social, which @ispizua.bsky.social and @elliottabe.bsky.social used to gain insight into 3D structure of locomotion & courtship www.biorxiv.org/content/10.6...
Congratulations to #FlatironCCN director @eerosim.bsky.social on his election to the National Academy of Sciences! https://bit.ly/42AEUhl #science #neuroscience
CCN Director Eero Simoncelli Elected to National Academy of Sciences
Eero Simoncelli, director of the Flatiron Institute’s Center for Computational Neuroscience (CCN), has been elected to the National Academy of Sciences.
bit.ly
New preprint @biorxiv-neursci.bsky.social 🎉 We map the functional organization of retinal input to the 🐭 superior colliculus & capture it in a dynamic "digital twin" that generalizes to unseen stimuli Probe it with your own stimuli via Colab to test hypotheses in silico👇 Amazing team effort 🙌
𝘞𝘩𝘢𝘵 𝘪𝘧 𝘺𝘰𝘶 𝘤𝘰𝘶𝘭𝘥 𝘵𝘦𝘴𝘵 𝘺𝘰𝘶𝘳 𝘩𝘺𝘱𝘰𝘵𝘩𝘦𝘴𝘦𝘴 𝘷𝘪𝘳𝘵𝘶𝘢𝘭𝘭𝘺 𝘣𝘦𝘧𝘰𝘳𝘦 𝘳𝘶𝘯𝘯𝘪𝘯𝘨 𝘢𝘯𝘺 𝘦𝘹𝘱𝘦𝘳𝘪𝘮𝘦𝘯𝘵 𝘪𝘯 𝘵𝘩𝘦 𝘭𝘢𝘣? 𝗡𝗲𝘄 𝗽𝗿𝗲𝗽𝗿𝗶𝗻𝘁 𝗼𝘂𝘁 𝗻𝗼𝘄! 🎉 📄 Paper: doi.org/10.64898/202... 💻 Colab notebook: colab.research.google.com/drive/1k9411... 🗂️ Code: github.com/yongrong-qiu... (1/🧵)