Zhi Lindsey Lin

@zhilindseylin.bsky.social

Postdoc at UCSF Wells lab, PhD 22’ Harvard Woo lab, BS 17’ Peking University Peng Chen lab

Excited to share our newest paper on @natchembio.nature.com where we present temporal MultiMap for dynamic neighborhood mapping. Our sincere gratitude to all our collaborators for their hard work!

Gene Chong@chongg.bsky.social · 10mo ago

A new paper from @zhilindseylin.bsky.social @jimwellsucsf.bsky.social and colleagues presents temporal mapping of extracellular and intracellular neighborhoods of a protein of interest with MultiMap photoproximity labeling proteomics, here applied to EGFR www.nature.com/articles/s41...

Excited to share our new preprint, which was years in the making! chemrxiv.org/engage/chemr... New reactions are typically developed by trial and error. How can we speed up this process? Read on to learn how we used DNA scaffolding to perform >500,000 parallel reactions on attomole scale. 1/n

DNA-Scaffolded Ultrahigh-Throughput Reaction Screening

Discovering and optimizing reactions is central to synthetic chemistry. However, chemical reactions are traditionally screened using relatively low-throughput methods, prohibiting exploration of diver...

chemrxiv.org

Super grateful to have this great experience at the Bioorganic Chemistry GRS! Thank you to my co-chair @ssmelyansky.bsky.social and everyone who attended for making it such a wonderful event! 🤩

Stephanie Smelyansky@ssmelyansky.bsky.social · last yr.

Last week, I had the privilege of chairing the Bioorganic Chemistry GRS with my amazing co-chair @zhilindseylin.bsky.social. Thank you to all of our amazing speakers, poster presenters for a truly incredibly GRS!

Look forward to our Bioorganic GRS+GRC in a few days! -> For those who are interested in hiring: I'll be setting up a job post bulletin at the GRS that hopefully will let our early-career scientists know about opportunities in your lab. If you’re interested, feel free to DM me your poster!

Jordan Meier@doc-jlmeier.bsky.social · last yr.

Bioorganic GRC is set! I got tired of the lack of swag so made a couple of unofficial tees. Order one if you want to support the conference (or simply enjoy strange looks in grocery stores). Spirit: chembio-shop.fourthwall.com/products/grc... World Tour: chembio-shop.fourthwall.com/products/spi...

Excited to share that our cell surface proteome review is now online on Chemical Reviews! 🥰 We highlight recent advances of techniques mapping cell surface protein expression, protein-protein interactions, extracellular PTMs and MHC complexes. @jimwellsucsf.bsky.social pubs.acs.org/doi/10.1021/...

Engineered Proteins and Chemical Tools to Probe the Cell Surface Proteome

The cell surface proteome, or surfaceome, is the hub for cells to interact and communicate with the outside world. Many disease-associated changes are hard-wired within the surfaceome, yet approved drugs target less than 50 cell surface proteins. In the past decade, the proteomics community has made significant strides in developing new technologies tailored for studying the surfaceome in all its complexity. In this review, we first dive into the unique characteristics and functions of the surfaceome, emphasizing the necessity for specialized labeling, enrichment, and proteomic approaches. An overview of surfaceomics methods is provided, detailing techniques to measure changes in protein expression and how this leads to novel target discovery. Next, we highlight advances in proximity labeling proteomics (PLP), showcasing how various enzymatic and photoaffinity proximity labeling techniques can map protein–protein interactions and membrane protein complexes on the cell surface. We then review the role of extracellular post-translational modifications, focusing on cell surface glycosylation, proteolytic remodeling, and the secretome. Finally, we discuss methods for identifying tumor-specific peptide MHC complexes and how they have shaped therapeutic development. This emerging field of neo-protein epitopes is constantly evolving, where targets are identified at the proteome level and encompass defined disease-associated PTMs, complexes, and dysregulated cellular and tissue locations. Given the functional importance of the surfaceome for biology and therapy, we view surfaceomics as a critical piece of this quest for neo-epitope target discovery.

pubs.acs.org

Really enjoyed this proximity-based therapeutics keystone conference! Appreciate the organizers Fleur @fleurmferguson.bsky.social and Phil for the opportunity and for putting together this wonderful event!

Keystone Symposia@keystonesymposia.bsky.social · 2y ago

Celebrate the scholarship winners from Proximity-Based Therapeutics: Markella Konstantinidou, @zhilindseylin.bsky.social, Charlene Mae Magtoto, Ashwini Premashankar, & Maximilian R. Stammnitz. Learn more about financial aid at keysym.us/KSFinancialAid. #keystonesymposia #keystoneconferences

Reminder to join us (@fionachembot.bsky.social) for the Glycobiology GRS (and GRC!) in March. December 15 is the deadline for trainees (graduate students and postdocs) to submit abstracts to be considered for a talk at the GRS. #glycotime

Nick Riley@nmriley.bsky.social · 2y ago

Are you a trainee interested in glycobiology? Join us for the Glycobiology Gordon Research Seminar, March 22-23, 2025 in Italy! www.grc.org/glycobiology... We will have talks, posters, and a mentoring session with #glycotime leaders. Submit abstracts by Dec 15 to be considered for a talk!

Are you a trainee interested in glycobiology? Join us for the Glycobiology Gordon Research Seminar, March 22-23, 2025 in Italy! www.grc.org/glycobiology... We will have talks, posters, and a mentoring session with #glycotime leaders. Submit abstracts by Dec 15 to be considered for a talk!

2025 Glycobiology (GRS) Seminar GRC

The 2025 Gordon Research Seminar on Glycobiology (GRS) will be held in Lucca (Barga), Lucca Italy. Apply today to reserve your spot.

grc.org

This is going to be an awesome weekend featuring great talks and interactions with the community. Hope to see you all in June 2025! 🙌

Jordan Meier@doc-jlmeier.bsky.social · 2y ago

Students and fellows should also check out the GRS, a stand-alone research seminar being organized by the amazing @ssmelyansky.bsky.social and Lindsey Lin: . grc.org/bioorganic-c... Shout out to my amazing co-organizer Denise Field (Pfizer). Hope to see many of you in NH in June!

Also fyi admission to the GRS does not guarantee admission to the GRC or vice versa! We are two standalone conferences, but we encourage trainees to apply to both if interested. If you have questions feel free to DM me!

If you are a trainee in chembio and looking for one conference to attend for 2025, you should apply for the bioorganic GRS that @ssmelyansky.bsky.social and I are putting together!

Stephanie Smelyansky@ssmelyansky.bsky.social · 2y ago

Come hang with me and @zhilindseylin.bsky.social at the 2025 Bioorganic Chemistry GRS! It’ll be a weekend full of excellent science and even more excellent people. The GRS is one of my favorite weekends of the year and we’re looking forward to another seminar full of amazing, trainee-led science!

Check out this comprehensive work led by Johannes @mo_hannes (soon-to-join Caltech 2025!) with @kevansf. Grateful to contribute to this great discovery targeting GTPases beyond K-Ras. Congratulations to the team! 🥳 https://t.co/4TBhFeI0ls