Troubleshooting common errors in assemblies of long-read metagenomes www.nature.com/articles/s41... #jcampubs

Troubleshooting common errors in assemblies of long-read metagenomes - Nature Biotechnology

Long-read sequence assemblies from metagenomes contain frequent errors.

nature.com

Troubleshooting common errors in assemblies of long-read metagenomes - @merenbey.bsky.social @banfieldlab.bsky.social go.nature.com/44P7nSm

Troubleshooting common errors in assemblies of long-read metagenomes - Nature Biotechnology

Long-read sequence assemblies from metagenomes contain frequent errors.

go.nature.com

Really important read for people working with long-read MAGs. www.nature.com/articles/s41...

Troubleshooting common errors in assemblies of long-read metagenomes - Nature Biotechnology

Long-read sequence assemblies from metagenomes contain frequent errors.

nature.com

Now published in Nature Biotechnology: go.nature.com/44P7nSm If you missed it, the TL;DR is in my April thread below

Troubleshooting common errors in assemblies of long-read metagenomes - Nature Biotechnology

Long-read sequence assemblies from metagenomes contain frequent errors.

go.nature.com

Florian Trigodet@floriantrigodet.bsky.social · last yr.

I am very happy (and anxious) to share with you our most recent work in which we evaluated four of the most popular long-read assemblers, www.biorxiv.org/content/10.1... and tell you just a little bit about it in the following 🧵

We have a date for the free-to-attend #anvio workshop and ECR Symposium for 2026, and we look forward to meeting you at the @hifmb.de in Oldenburg, Germany! Please find more information on the venue, program, and the application form here, and spread the word 😇 anvio.org/workshops/20...

I'm happy to announce the latest release of the GlobDB, available at globdb.org. The GlobDB is a database of "species dereplicated" microbial genomes, and as of release 226 contains twice the number of species-representative genomes (306,260) than the latest GTDB release.

We have a new 3-year postdoc position in our group at the @hifmb.de to study plasmids and plasmids systems of the marine environment to survey their utility in microbial responses to environmental change. Please see the official job ad here, and spread the word: jobs.awi.de/Vacancies/20...

New #MicrobiomeDigest: microbiomedigest.com/2025/04/30/a... •Herrgårds cheese @jrotwitguez.bsky.social‬ •Asian Skin Microbiome Program @cherrychengchenli.bsky.social ‬ •long-read assemblers @floriantrigodet.bsky.social •argNorm @vedanthramji.bsky.social CU next week at @microbiomevif.bsky.social!

April 30, 2025

See you next week at MVIF!  Skin microbiome Large-scale skin metagenomics reveals extensive prevalence, coordination, and functional adaptation of skin microbiome dermotypes across body sites – Che…

microbiomedigest.com

Genomes from long-read metagenomic assemblies contain rampant errors, highlighting the pressing need for stricter evaluation methods in long-read assembly algorithms. Read more in our paper with the Eren group. @floriantrigodet.bsky.social @merenbey.bsky.social

Assemblies of long-read metagenomes suffer from diverse errors

Genomes from metagenomes have revolutionised our understanding of microbial diversity, ecology, and evolution, propelling advances in basic science, biomedicine, and biotechnology. Assembly algorithms...

biorxiv.org

Florian Trigodet@floriantrigodet.bsky.social · last yr.

I am very happy (and anxious) to share with you our most recent work in which we evaluated four of the most popular long-read assemblers, www.biorxiv.org/content/10.1... and tell you just a little bit about it in the following 🧵

I am very happy (and anxious) to share with you our most recent work in which we evaluated four of the most popular long-read assemblers, www.biorxiv.org/content/10.1... and tell you just a little bit about it in the following 🧵

Assemblies of long-read metagenomes suffer from diverse errors

Genomes from metagenomes have revolutionised our understanding of microbial diversity, ecology, and evolution, propelling advances in basic science, biomedicine, and biotechnology. Assembly algorithms...

biorxiv.org

Unique investigation of some errors in long read assemblers. In particular these remarkably chimeric contigs are 😱, if rare.... Improving long read assemblers is definitely the space to be in when it comes to the future of metagenomics, as short reads won't be part of it 😉

bioRxiv Bioinfo@biorxiv-bioinfo.bsky.social · last yr.

Assemblies of long-read metagenomes suffer from diverse errors https://www.biorxiv.org/content/10.1101/2025.04.22.649783v1

A blog post on the #anvio workshop that took place last week at the @hifmb.de in Oldenburg with photographs and participant survey results 😇 anvio.org/blog/oldenbu...

Photos and survey results form the anvi'o workshop and ECR symposium at Oldenburg

Hither shalt thou find likenesses trapped in time, and the opinions of those who did attend this noble workshop

anvio.org

A reminder for ECRs who are looking for an opportunity to form their own group to study contemporary questions in marine sciences in Germany with 5-years of support: hifmb.de/focus-group-...