AGAT v1.7.0 is out 🚀 🧵 Parallel parsing of GXF files (GFF/GTF) ⚡ Faster, even on a single core 💾 Lower memory usage and many improvements & fixes github.com/NBISweden/AGAT #bioinformatics #genomics

GitHub - NBISweden/AGAT: Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/

Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/ - NBISweden/AGAT

github.com

📝 Pick a License, Not Any License ✍️ Paired Ends (Stephen Turner's blog)

🚀 AliNe v1.6.0 is out! ✨ Now featuring: • Up to 20 alignment algorithms • CRAM output support • New parameter to filter unmapped reads • Automatic TSV comparison table generated when statistics are enabled github.com/Juke34/AliNe

📝 Scientific production in the era of large language models ✍️ Paired Ends (Stephen Turner's blog)

nf-core/proteinfamilies: A scalable pipeline for the generation of protein families academic.oup.com/gigascience/... 🧬💻🧪

BIOCONDA ... 😈😅

Want to customize your GitHub README/profile page? 🙂 This README playground by @amrei-bp is a great resource to experiment. github.com/amrei-bp/rea...

GitHub - amrei-bp/readme_playground: ✍ A collection of options to spice up your README's.

✍ A collection of options to spice up your README's. - amrei-bp/readme_playground

github.com

Really liking the idea and output of GAQETv2 - such a cool tool for structural genome annotation QC!! www.protocols.io/view/structu...

Glad to have contributed to this study describing a novel Tequintavirus infecting Salmonella enterica serotype Tennessee. My first involvement in bacteriophage research! #phages #bacteriophage link.springer.com/article/10.1...

Characterization and comparative genome analysis of a new Tequintavirus isolated on Salmonella enterica serotype Tennessee - BMC Research Notes

Objective The rise in multidrug-resistant pathogenic bacteria presents a major current challenge, highlighting the urgent need for alternatives and sustainable biocontrol strategies. We aimed to isola...

link.springer.com

Glad to attend the @nf-co.re #Hackathon from Montpellier! Great collaboration, inspiring discussions, and lots of fun 🚀 #bioinformatics

My latest #Nextflow pipeline has just been published in JOSS 🎉

Journal of Open Source Software@joss-openjournals.bsky.social · last yr.

Just published in JOSS: 'AliNe: A Flexible and Efficient Nextflow Pipeline for Read Alignment' https://doi.org/10.21105/joss.07545

📰 Vous n'avez rien compris au changement de licence Anaconda ? 🐍 On vous explique pourquoi et comment se mettre en règle : https://bioinfo-fr.net/conda-et-le-piege-de-la-licence-anaconda #bioinfofr #anaconda #conda

Conda et le piège de la licence Anaconda - Bioinfo-fr.net

Conda est appa­ru en 2012 et a été dis­tri­bué par Conti­nuum Ana­ly­tics, connue sous le nom d’Ana­con­da Inc depuis 2017. Conda est dis­tri­bué sous la licence MIT, l’une des licences open-source les plus per­mis­sives, per­met­tant aux uti­li­sa­teurs d’adopter, d’adapter et de par­ta­ger le logi­ciel presque sans res­tric­tions. Conda a été conçu pour gérer les envi­ron­ne­ments […]

bioinfo-fr.net

Super excited for the distributed nf-core hackathon! We've got 36+ local sites being organized in over 20 countries! Registration is now open!

nf-core@nf-co.re · 2y ago

Calling all bioinformatics enthusiasts! Join a global network of @nextflow.io ninjas for the @nf-co.re hackathon from March 24-26, 2025 🎉 Collaborate remotely or at one of the 36+ local sites worldwide (🇦🇷🇦🇺🇧🇪🇧🇷🇨🇦🇨🇴🇨🇿🇩🇰🇪🇹🇫🇷🇩🇪🇬🇭🇬🇷🇮🇳🇮🇹🇳🇱🇳🇿🇵🇰🇵🇱🇿🇦🇪🇸🇸🇪🇨🇭🇹🇷🇬🇧🇺🇸). Registration is now open! 🎟 nf-co.re/events/2025/...

🚨BREAKING. From a program officer at the National Science Foundation, a list of keywords that can cause a grant to be pulled. I will be sharing screenshots of these keywords along with a decision tree. Please share widely. This is a crisis for academic freedom & science.

Registration to our #rstats Summer School RaukR 2025 Beyond The Basics is open! Don't miss the opportunity to elevate your R skillset! #r #datascience #bioinformatics #NBISweden @scilifelab.se

I’m thrilled to join the first cohort of 2025 Nextflow Ambassadors! seqera.io/blog/welcome... I'm still promoting #Nextflow and highlighting its incredible potential in #Bioinformatics, but with an Nextflow ambassador hat on now.It's good to be supported, thx @mribeirodantas.bsky.social @nextflow.io

Join us in welcoming the first cohort of 2025 Nextflow Ambassadors | Seqera

It's time to welcome the new ambassadors who joined the Nextflow Ambassador Program for the 2025.1 semester.

seqera.io

NBIS is seeking a #Nextflow pipeline developer ( permanent position ) in Uppsala, Sweden. www.uu.se/en/about-uu/.... Come join us and don't forget to include your Github/Gitlab/developer profile.

Bioinformatician in pipeline development - Uppsala University

Bioinformatician in pipeline development, Department of Cell and Molecular Biology, Uppsala University

uu.se

#EDTA v2.2.2 is now available on #bioconda 🎉

Day 2 of training to explore ANVIO with @tomdelmont.bsky.social at IRD Montpellier: an incredibly enriching experience! 🚀 #Bioinformatics #ANVIO

Avoiding the pitfalls of Anaconda license changes: a practical guide juke34.github.io/fix-anaconda...